BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0882.p (233 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value NMA1272 [R] COG3318 Predicted metal-binding protein related to t... 100 2e-21 NMB1071 [R] COG3318 Predicted metal-binding protein related to t... 100 2e-21 STM1938 [R] COG3318 Predicted metal-binding protein related to t... 85 1e-16 ZyecA [R] COG3318 Predicted metal-binding protein related to the... 81 2e-15 ECs2616 [R] COG3318 Predicted metal-binding protein related to t... 81 2e-15 >NMA1272 [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA NmA Neisseria meningitidis Z2491 Length = 220 Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 12/214 (5%) Query: 17 RLGEFLEEAGSPG--MNIELLDGYFAALICGPEAVLPSEYLPQLLGEEPPFENQEEASDI 74 RL E L+ G M + + G+ AL+ GP+ + P ++LP++LG+E F E S+I Sbjct: 13 RLSELLDAKSEQGNTMRCDEVQGFMTALLSGPDKLTPLDWLPEVLGDESQF-TAAERSEI 71 Query: 75 LGLIMR-HWNTIASTLARTLEEDMVYLPVLLEDEHGVAHGNDWAQGFMHGVHCRLGAWEE 133 L++ T A+ + L + +Y E+E G + W +++G+ W E Sbjct: 72 ERLVLAMAMETTAAMSDKKLPDLWLY-----ENEDGGSDFYTWCNAYLYGLDIVPTDWFE 126 Query: 134 LLESEEFGEFMLPIFALVHEHDPDPNLRPPAITPDKRDAVLQAMI-VSVTHIYRYFVPHR 192 ++ E F E PI AL +D + N + A L++ + ++ IYRY+ Sbjct: 127 AVDDEAFEELFYPIMALGGIYDEEDNGTIRLQFTEGELAELESELPYALADIYRYWQAVI 186 Query: 193 RSAVRMTSRRAGPKISRNDPCPCGSGRKYKYCCA 226 T RR G K RNDPCPCGSGRKYK CC Sbjct: 187 NKP--QTVRREGEKTGRNDPCPCGSGRKYKACCG 218 >NMB1071 [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA Nme Neisseria meningitidis MC58 Length = 220 Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 12/214 (5%) Query: 17 RLGEFLEEAGSPG--MNIELLDGYFAALICGPEAVLPSEYLPQLLGEEPPFENQEEASDI 74 RL E L+ G M + + G+ AL+ GP+ + P ++LP++LG+E F E S+I Sbjct: 13 RLSELLDAKSEQGNTMRCDEVQGFMTALLSGPDKLTPLDWLPEVLGDESQF-TAAERSEI 71 Query: 75 LGLIMR-HWNTIASTLARTLEEDMVYLPVLLEDEHGVAHGNDWAQGFMHGVHCRLGAWEE 133 L++ T A+ + L + +Y E+E G + W +++G+ W E Sbjct: 72 ERLVLAMAMETTAAMSDKKLPDLWLY-----ENEDGGSDFYTWCNAYLYGLDIVPTDWFE 126 Query: 134 LLESEEFGEFMLPIFALVHEHDPDPNLRPPAITPDKRDAVLQAMI-VSVTHIYRYFVPHR 192 ++ E F E PI AL +D + N + A L++ + ++ IYRY+ Sbjct: 127 AVDDEAFEELFYPIMALGGIYDEEENGAIRLQFTEGELAELESELPYALADIYRYWQAVI 186 Query: 193 RSAVRMTSRRAGPKISRNDPCPCGSGRKYKYCCA 226 T RR G K RNDPCPCGSGRKYK CC Sbjct: 187 NKP--QTVRREGEKTGRNDPCPCGSGRKYKACCG 218 >STM1938 [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA Sty Salmonella typhimurium LT2 Length = 221 Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 108/224 (48%), Gaps = 14/224 (6%) Query: 8 QPLNDDELDRLGEFLEEAGSPG--MNIELLDGYFAALICGPEAVLPSEYLPQLLGEE--- 62 +PLN++EL+ L + L + + +++ LDG A++ P + P ++L + G Sbjct: 4 EPLNENELEWLDDVLTKYNTDQAILDVAELDGLITAVLSSPRPIDPEQWLVAIWGGPAYV 63 Query: 63 PPFENQEEASDILGLIMRHWNTIASTLARTLEEDMVYLPVLLEDEHGVAHGNDWAQGFMH 122 P + +++E + + L+ +H A+ L E+ + D H + +W G+M Sbjct: 64 PRWTSEKEMTRFMDLVFQHMADTAARLEDYPEQFEPLFGLREVDGHELTIVEEWCFGYMR 123 Query: 123 GVHCRLGAWEELLESEEFGEFMLPIFALVHEHDPDPNLRP-PAITPDKRDAVLQAMIVSV 181 GV L W +L ++ + P + H + N ++P+ D + A+ ++ Sbjct: 124 GV--SLSDWSDLPDT------LKPALEAIALHGTEENFALLDKMSPEAFDKSVDAIRIAA 175 Query: 182 THIYRYFVPHRRSAVRMTSRRAGPKISRNDPCPCGSGRKYKYCC 225 ++ +++ H + +A K+ RNDPCPCGSG+K+K CC Sbjct: 176 LELHAWWMAHPHTTPLQMPIKAEVKVGRNDPCPCGSGKKFKQCC 219 >ZyecA [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA EcZ Escherichia coli O157:H7 EDL933 Length = 221 Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 14/223 (6%) Query: 9 PLNDDELDRLGEFLEEAGSPG--MNIELLDGYFAALICGPEAVLPSEYLPQLLGEE---P 63 PLN+ EL+ L + L + + +++ LDG A++ P+ + P+++L + G P Sbjct: 5 PLNESELEWLDDILTKYNTDHAILDVAELDGLLTAVLSSPQEIEPAQWLVAVWGGADYVP 64 Query: 64 PFENQEEASDILGLIMRHWNTIASTLARTLEEDMVYLPVLLEDEHGVAHGNDWAQGFMHG 123 + +++E + + L +H A L E+ + D + +W G+M G Sbjct: 65 RWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFGLREVDGSELTIVEEWCFGYMRG 124 Query: 124 VHCRLGAWEELLESEEFGEFMLPIFALVHEHDPDPNL-RPPAITPDKRDAVLQAMIVSVT 182 V L W L +S + P + H + N R ++P+ + + A+ ++ Sbjct: 125 V--ALSDWSTLPDS------LKPALEAIALHGTEENFERVEKMSPEAFEESVDAIRLAAL 176 Query: 183 HIYRYFVPHRRSAVRMTSRRAGPKISRNDPCPCGSGRKYKYCC 225 ++ Y++ H + +A K RNDPCPCGSG+K+K CC Sbjct: 177 DLHAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQCC 219 >ECs2616 [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA Ecs Escherichia coli O157:H7 Length = 221 Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 14/223 (6%) Query: 9 PLNDDELDRLGEFLEEAGSPG--MNIELLDGYFAALICGPEAVLPSEYLPQLLGEE---P 63 PLN+ EL+ L + L + + +++ LDG A++ P+ + P+++L + G P Sbjct: 5 PLNESELEWLDDILTKYNTDHAILDVAELDGLLTAVLSSPQEIEPAQWLVAVWGGADYVP 64 Query: 64 PFENQEEASDILGLIMRHWNTIASTLARTLEEDMVYLPVLLEDEHGVAHGNDWAQGFMHG 123 + +++E + + L +H A L E+ + D + +W G+M G Sbjct: 65 RWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFGLREVDGSELTIVEEWCFGYMRG 124 Query: 124 VHCRLGAWEELLESEEFGEFMLPIFALVHEHDPDPNL-RPPAITPDKRDAVLQAMIVSVT 182 V L W L +S + P + H + N R ++P+ + + A+ ++ Sbjct: 125 V--ALSDWSTLPDS------LKPALEAIALHGTEENFERVEKMSPEAFEESVDAIRLAAL 176 Query: 183 HIYRYFVPHRRSAVRMTSRRAGPKISRNDPCPCGSGRKYKYCC 225 ++ Y++ H + +A K RNDPCPCGSG+K+K CC Sbjct: 177 DLHAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQCC 219