BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0878.p (526 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0030 [KE] COG1167 Transcriptional regulators containing a DNA... 511 e-144 YPO2845 [KE] COG1167 Transcriptional regulators containing a DNA... 451 e-126 RSc3119 [KE] COG1167 Transcriptional regulators containing a DNA... 337 6e-92 alr4738 [KE] COG1167 Transcriptional regulators containing a DNA... 313 5e-85 mll2434 [KE] COG1167 Transcriptional regulators containing a DNA... 303 5e-82 >RSc0030 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Rso Ralstonia solanacearum Length = 509 Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust. Identities = 257/485 (52%), Positives = 325/485 (67%), Gaps = 24/485 (4%) Query: 51 PVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLLAEGYLESRTG 110 P +R++Y++++E IL L G +LPSSR LA ELG +RNTV + YEQL EGY+ + G Sbjct: 30 PDHRRLYRMLQEGILRDELQPGTRLPSSRQLAAELGIARNTVIHVYEQLGVEGYVSAGVG 89 Query: 111 AGTFVADTAPDQ-------------IPEAVERVEPLTDPSGKSELSARGALLTRQAGVGE 157 +GTFVADT PD+ I EA P+ LS+RG L R AG Sbjct: 90 SGTFVADTVPDRLDAAPPPAAAPVSISEAAMPAAPM--------LSSRGRALVRDAGASS 141 Query: 158 RQWGAFMPGVPDVTCVPHKIWGRLQNKHWRRSNSDLLTYGPGAGYTGLREQIAEYLRVAR 217 RQWGAFMPGVP+V P + W RL N+ R+ + LLTY GAGY LR +A+YLR AR Sbjct: 142 RQWGAFMPGVPEVRMFPARTWSRLHNRLLRKPSPALLTYPVGAGYLPLRTALADYLRTAR 201 Query: 218 SVNCTPSQVLITTGIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVD 277 V C P Q++IT GIH S+ ++ +LL + GD+AW+EDP YWG RSVL + G+++VP+ VD Sbjct: 202 GVRCEPEQIIITAGIHPSLQLIAQLLCDAGDSAWIEDPGYWGVRSVLTAAGVRTVPLPVD 261 Query: 278 QEGMRMRLANLR---RPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYD 334 EGMR A R RPP+ + +PSHQYPLG VMSL+RRR LL A WI+EDDYD Sbjct: 262 DEGMRFEAAGRRQRGRPPKLMVVSPSHQYPLGSVMSLARRRQLLATAQATDAWIVEDDYD 321 Query: 335 SEFRYGGRPLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAQAFATGIAELYR 394 SEFRYG RPL SLQG+D RVLYMGTFSK++FP LRIG+LVVP +LA+AFATG++E++R Sbjct: 322 SEFRYGSRPLPSLQGLDEGGRVLYMGTFSKVLFPSLRIGYLVVPPALAEAFATGLSEMFR 381 Query: 395 NGQVFLQATLADFMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHL 454 GQ+ QA LA+F+AEGHF SHIR+MR +YAER + L ++I R FGE + + G +GLHL Sbjct: 382 GGQILTQAVLAEFIAEGHFVSHIRRMRGVYAERRETLLEAIRREFGEALPVHDGASGLHL 441 Query: 455 VLGLPQECDDVLICEQALQAGIVVRPLSRYYMHARGARRGLLLGYASVPNDEIARAFDKL 514 VLGLP DDV + E AL +V RPLSRYY + GLLLGY V + I F L Sbjct: 442 VLGLPPGTDDVAVVEAALARDVVTRPLSRYYQDDARRQPGLLLGYGHVETEAIGGRFAVL 501 Query: 515 AAVIK 519 A I+ Sbjct: 502 AEAIR 506 >YPO2845 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Ype Yersinia pestis Length = 501 Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust. Identities = 219/468 (46%), Positives = 306/468 (65%), Gaps = 2/468 (0%) Query: 53 NRQIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLLAEGYLESRTGAG 112 N+++Y+ +R +IL ++ AG +LP+SRDLA EL SRNTV AY+QL AEGY+++RTG G Sbjct: 26 NKRLYRALRLSILDGSIRAGSRLPASRDLAQELEISRNTVLAAYDQLQAEGYIQTRTGGG 85 Query: 113 TFVADTAPDQIPEAVERVEPLTDPSGKSELSARGALLTRQAGVGERQWGAFMPGVPDVTC 172 TFV P+ ++ + + P LS R L GV QWG FMPGVPDV Sbjct: 86 TFVTTDLPEDGLNKMDTLPQHSGPEPDVALSTRATHLLNHCGVASYQWGTFMPGVPDVRL 145 Query: 173 VPHKIWGRLQNKHWRRSNSDLLTYGPGAGYTGLREQIAEYLRVARSVNCTPSQVLITTGI 232 PH++W +LQ + R N + LTY G L++ +A+YLR+ARSV+CTP Q+LIT G Sbjct: 146 FPHEVWRKLQTRLSRHLNPENLTYSVHGGCPQLQQALADYLRIARSVSCTPDQILITAGT 205 Query: 233 HQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMR-MRLANLRRP 291 HQ++D++ K+L + GD AW+E+P YWG R+VL GI+ +P++VD+ GM + L R Sbjct: 206 HQALDLLAKMLCDPGDHAWIEEPSYWGIRNVLTINGIEVIPVSVDENGMDPLDLPFESRS 265 Query: 292 PRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGRPLASLQGMD 351 PR IC TPSHQYPLG VMSL+RR+ +L A H W++EDDYDSEFR+ G P+ +LQG+ Sbjct: 266 PRLICVTPSHQYPLGSVMSLTRRQRILALAQQHNCWVVEDDYDSEFRFSGSPIPALQGLI 325 Query: 352 TQDRVLYMGTFSKIMFPGLRIGFLVVPESLAQAFATGIAELYRNGQVFLQATLADFMAEG 411 V+Y+GTFSK ++PG+RI ++V+P LAQ F +ELYR G +Q TLA+F+ EG Sbjct: 326 PDAPVIYLGTFSKTLYPGMRISYMVLPRPLAQQFKVAHSELYRGGNGMMQLTLAEFIREG 385 Query: 412 HFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQECDDVLICEQA 471 H+ASHIR+MR++Y +R L I + G G AGLHL+L LP+ DDV + + Sbjct: 386 HYASHIRRMRLIYGKRRAALVGMIKQQLGGSFLAEYGNAGLHLILALPESIDDVALSAEL 445 Query: 472 LQAGIVVRPLSRYYMHARGARRGLLLGYASVPNDEIARAFDKLAAVIK 519 Q G++VR LS YY+ + RRGLLLGY VP + + F + + ++ Sbjct: 446 EQKGVLVRALSGYYLKS-PPRRGLLLGYGCVPEEAMEAVFAPIVSYLR 492 >RSc3119 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Rso Ralstonia solanacearum Length = 488 Score = 337 bits (863), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 203/486 (41%), Positives = 266/486 (54%), Gaps = 12/486 (2%) Query: 41 KTAKTFGVSTPVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLL 100 +T + P ++Y +R AIL+ L G +L +SR LA ELG +RN+V YAYE+L Sbjct: 13 ETGREAIARMPQQHRLYACLRAAILSGKLEEGTRLLASRTLAEELGMARNSVLYAYERLA 72 Query: 101 AEGYLESRTGAGTFVADTAPDQIPEAVERVEPLTDPSGKSELSARGALLTRQAGVGERQW 160 +EG++ R GT VA Q P A P LS R A + R G G Sbjct: 73 SEGFVVGRR-QGTVVARVGLQQSPAAT--------PGDAPVLSRRVARIER-PGDGMDDP 122 Query: 161 GAFMPGVPDVTCVPHKIWGRLQNKHWRRSNSDLLTYGPGAGYTGLREQIAEYLRVARSVN 220 F+PG P + P W R + WR L Y P G LR+ IAEYLRV+R V Sbjct: 123 LPFLPGTPALGAFPLAQWRRCVERAWRSIGPAQLGYMPVEGNAALRQAIAEYLRVSRGVR 182 Query: 221 CTPSQVLITTGIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEG 280 C QV IT G S+D+ + L + DTAW+E+P Y G R + ++ PI VD +G Sbjct: 183 CEARQVFITDGTQNSLDLCARTLADADDTAWIENPGYSGARHAFQAANLRLAPIPVDADG 242 Query: 281 MRMRLANLR-RPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRY 339 + R + R RPPR I TPSHQYPLG VMSL RR LL A WIIEDDYDSEFR+ Sbjct: 243 LAPRPEDWRDRPPRLIYITPSHQYPLGAVMSLERRLALLAQARAAGAWIIEDDYDSEFRH 302 Query: 340 GGRPLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAQAFATGIAELYRNGQVF 399 G PL+++QG+ V+Y+GTFSK+MFP LR+GF+VVP +LA L G+V Sbjct: 303 QGAPLSAVQGLTEDAPVIYLGTFSKVMFPALRLGFMVVPPALAPVLRRTAGALMLRGRVA 362 Query: 400 LQATLADFMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLP 459 Q LADF+ GHF H+R+MR LYAER LQ ++ R +T++GG G+HL L Sbjct: 363 EQLALADFIDAGHFTRHLRRMRRLYAERRDALQGALERRLRGLLTVSGGAGGMHLSARLD 422 Query: 460 QECDDVLICEQALQAGIVVRPLSRYYMHA-RGARRGLLLGYASVPNDEIARAFDKLAAVI 518 D + G+V+RPLSR+ + G GL+LGY +V + R +L VI Sbjct: 423 VPVRDTEVSRVGRAHGLVLRPLSRFCLPGTEGPYNGLVLGYGAVDAGRMDRLVQQLGQVI 482 Query: 519 KPHLAG 524 + LAG Sbjct: 483 EAALAG 488 >alr4738 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Nos Nostoc sp. PCC 7120 Length = 490 Score = 313 bits (803), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 185/475 (38%), Positives = 267/475 (56%), Gaps = 10/475 (2%) Query: 51 PVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLLAEGYLESRTG 110 P++RQ+Y+ +R AIL L +G +LPS+R LA LG SR TVT YE LL+EGYLE+ G Sbjct: 14 PLHRQVYEELRRAILLGRLTSGGKLPSTRSLAQLLGVSRATVTQGYELLLSEGYLETIVG 73 Query: 111 AGTFVADTAPDQIPEAVERVEPLTDPSGKSELSARGALLTRQAGVGERQWG---AFMPGV 167 +GTFV PD++ L + LSA G L+ +A + + +F G Sbjct: 74 SGTFVCRQLPDELLNTAPIESKLQPSNSLVPLSAYGKSLSDKAFLRIPEQAVEISFSYGR 133 Query: 168 PDVTCVPHKIWGRLQNKHWRRSNSDLLTYGPGA-GYTGLREQIAEYLRVARSVNCTPSQV 226 P P +W +L ++H S +++L Y + GY LRE IA YL +R+VNC Q+ Sbjct: 134 PAFDQFPIDLWRKLISRHCH-SKAEVLDYTDNSLGYQPLREAIAAYLSRSRAVNCQAEQI 192 Query: 227 LITTGIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMRMRLA 286 +I G Q +D++ ++L + D VE+P Y G R + G P+ VDQ G+ + Sbjct: 193 IIVGGSQQGLDLITRILIDPNDGIAVEEPGYLGARRAFLAQGASLFPVPVDQSGLIVSKL 252 Query: 287 NLRRPPRF--ICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGRPL 344 P+ I TPSHQ+P G V+SL RR LL +A V IIEDDYDSE+RYG RP+ Sbjct: 253 TTGIIPKLKLIYVTPSHQFPTGAVLSLPRRLELLAWAHKTGVMIIEDDYDSEYRYGERPI 312 Query: 345 ASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAQAFATGIAELYRNGQVFLQATL 404 +LQG+D + V+Y+GTFSK++FP LR+G+LV+P++L FA R + Q L Sbjct: 313 PALQGLDQGNSVVYVGTFSKVLFPALRLGYLVLPQNLVNIFARAKWLADRQCSLLEQYAL 372 Query: 405 ADFMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQECDD 464 DF+ EGH HIR+MR LY +R Q L QS+ HFG + I G AG+HL++ + + D Sbjct: 373 TDFITEGHLERHIRRMRSLYNQRRQTLVQSLFSHFGNRAKILGENAGMHLMVKIDTQISD 432 Query: 465 VLICEQALQAGIVV-RPLSRYYMHARGARRGLLLGYASVPNDEIARAFDKLAAVI 518 I + A +G+ + +Y + G+ + GYA + +I +LA VI Sbjct: 433 DEIVQSADLSGVSIGAAYPQYLKDSPGSE--FIFGYAELNEQQIQEGVRRLARVI 485 >mll2434 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Mlo Mesorhizobium loti Length = 484 Score = 303 bits (777), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 174/477 (36%), Positives = 255/477 (53%), Gaps = 12/477 (2%) Query: 49 STPVN--RQIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLLAEGYLE 106 +P N RQ+Y +R I LP+G LPS+R +A +L RNTV A +QL EGYL Sbjct: 15 DSPANLHRQLYVQLRGLIERRVLPSGHALPSTRVMARDLNVGRNTVIAACDQLALEGYLA 74 Query: 107 SRTGAGTFVADTAPDQIPEAVERVEPLTDPSGKSELSARG-ALLTRQAGVGERQWGAFMP 165 R + V D +P E ++ + LS RG +L + G AF P Sbjct: 75 IRPRRPSVVMD-----LPTRSAVAEQMS-VEDANPLSRRGQTMLAQPYHHGRPGMLAFHP 128 Query: 166 GVPDVTCVPHKIWGRLQNKHWRRSNSDLLTYGPGAGYTGLREQIAEYLRVARSVNCTPSQ 225 G+PD P W +L + + ++ DL GY L E IA YL +R V CT Q Sbjct: 129 GMPDPDNFPFNTWSKLLGRRAKFAHIDLFGTYHVKGYPPLCEAIARYLTASRGVKCTAEQ 188 Query: 226 VLITTGIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMRMRL 285 +++T G + D++ +LL + GDT W+E+P Y+G S S G + P+ V G + Sbjct: 189 IVVTNGAQSAFDLLARLLIDDGDTVWMEEPGYYGAGSAFVSAGAKLAPLRVSNAGWDLDP 248 Query: 286 ANLRRPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGRPLA 345 ++ PR I TPS +PLG+ M + +R LL A T + WIIEDDYD E+R+ G+P+ Sbjct: 249 PDVV--PRMIFVTPSCHHPLGITMPMEQRLNLLHMAETWRSWIIEDDYDGEYRFQGQPIP 306 Query: 346 SLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAQAFATGIAELYRNGQVFLQATLA 405 +LQG+ +RV+Y+GTF+KI+FP +R+GF+V P+++ + ++ + + QA LA Sbjct: 307 ALQGIGASNRVVYVGTFAKILFPAMRLGFMVAPKAIDHTIVSALSVSGQFAPLLTQAALA 366 Query: 406 DFMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQECDDV 465 DFM EGHF H+R+MR LYAER Q +S RH GE + E+G+ +V C D Sbjct: 367 DFMNEGHFTRHLRRMRRLYAERRQFFLESAQRHLGEWLDFHATESGIQVVGIFRDGCSDR 426 Query: 466 LICEQALQAGIVVRPLSRYYMHARGARRGLLLGYASVPNDEIARAFDKLAAVIKPHL 522 + E ALQ GI V LS Y H + GL++G+A+ + K ++ H Sbjct: 427 AVAEAALQQGINVSALSIQYRHGT-QQNGLVMGFAAADAQTTEKTMQKFRTALQSHF 482