BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0876.p (380 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1734 [E] COG3842 ABC-type spermidine/putrescine transport sys... 479 e-135 PA0603 [E] COG3842 ABC-type spermidine/putrescine transport syst... 448 e-125 YPO2846 [E] COG3842 ABC-type spermidine/putrescine transport sys... 394 e-109 BMEII0922 [E] COG3842 ABC-type spermidine/putrescine transport s... 360 2e-99 SMa1754 [E] COG3842 ABC-type spermidine/putrescine transport sys... 344 2e-94 >RSc1734 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Rso Ralstonia solanacearum Length = 363 Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust. Identities = 238/361 (65%), Positives = 277/361 (76%), Gaps = 1/361 (0%) Query: 20 SNSDVLVQFCGVKKTYDGENLIVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPT 79 DV+V F GV+KTYDGE L+VK LDLDI +GEFLTLLGPSGSGKTTCLMMLAGFEFPT Sbjct: 2 KTDDVIVSFRGVRKTYDGETLVVKHLDLDIYQGEFLTLLGPSGSGKTTCLMMLAGFEFPT 61 Query: 80 GGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQ 139 GGEIRL+G LLN VPPHKRNIGMVFQNYALFPH+T+AQNV YPL+VRK+ A R +V Sbjct: 62 GGEIRLEGTLLNTVPPHKRNIGMVFQNYALFPHLTVAQNVEYPLTVRKLAAAERAERVHH 121 Query: 140 ALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLEL 199 AL MV+M F RYP QLSGGQQQR+ALAR LVF+P+LVLMDEPLGALDKQLREHMQ EL Sbjct: 122 ALKMVRMEGFAKRYPAQLSGGQQQRIALARALVFEPKLVLMDEPLGALDKQLREHMQYEL 181 Query: 200 KALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGD 259 K+LH++LGVTFVYVTHDQ EALTMSDRVAVFD+GV+QQL V LYE P N FVANFIGD Sbjct: 182 KSLHEKLGVTFVYVTHDQGEALTMSDRVAVFDKGVVQQLDTVDRLYESPCNAFVANFIGD 241 Query: 260 NNRFKGSVESVQGEHCTVRLADGTVVTGLNVHRAHAGQAITACVRPERIRLAAGGSAEP- 318 +N +G+V + G++C ++L DG V G NV A G A C+RPER+RLA A Sbjct: 242 SNTLRGTVVGLDGDYCQLQLNDGARVIGRNVAGAPVGAAAVGCIRPERMRLAEPADAGAG 301 Query: 319 NAIRASIAGLIYFGDHVRVRCSVAGQEDCFVKLSLSDPALSGLTEGSSVVLHTAQDRLRC 378 NA+ GL+YFGDHVR+RC++ Q +CFVK+ L AL G+ + L A + LR Sbjct: 302 NALAGQTRGLVYFGDHVRMRCALPEQAECFVKVPLGTRALESFAPGAPIRLEFAPEHLRV 361 Query: 379 F 379 F Sbjct: 362 F 362 >PA0603 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Pae Pseudomonas aeruginosa Length = 369 Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/343 (64%), Positives = 257/343 (74%), Gaps = 2/343 (0%) Query: 19 SSNSDVLVQFCGVKKTYDGENLIVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFP 78 + DVLV F GV+K+YDGE LIVK L+LDIR+GEFLTLLGPSGSGKTT LMMLAGFE P Sbjct: 4 TQGGDVLVSFRGVQKSYDGETLIVKDLNLDIRKGEFLTLLGPSGSGKTTSLMMLAGFETP 63 Query: 79 TGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVK 138 T GEI L G+ +N VPPHKR+IGMVFQNYALFPHMT+A+N+A+PLSVR M + + +VK Sbjct: 64 TAGEILLAGRSINNVPPHKRDIGMVFQNYALFPHMTVAENLAFPLSVRGMSKTDVKERVK 123 Query: 139 QALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLE 198 +AL MVQ+ F RYP QLSGGQQQRVALAR LVF+PQLVLMDEPLGALDKQLREHMQ+E Sbjct: 124 RALSMVQLDAFAGRYPAQLSGGQQQRVALARALVFEPQLVLMDEPLGALDKQLREHMQME 183 Query: 199 LKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIG 258 +K LH+RLGVT VYVTHDQ EALTMSDRVAVF QG IQQ+ P LYE P N FVANFIG Sbjct: 184 IKHLHQRLGVTVVYVTHDQGEALTMSDRVAVFHQGEIQQIEPPRNLYEQPRNTFVANFIG 243 Query: 259 DNNRFKGSVESVQGEHCTVRLADGTVVTGLNVHRAHAGQAITACVRPERIRLAAGGSAEP 318 +NNR G + S GE C V L G V L V+ G+ +T +RPER+RL + Sbjct: 244 ENNRLSGQLLSCDGERCVVGLPRGEKVEALAVNVGQPGEPVTLSIRPERVRLNGASESCV 303 Query: 319 NAIRASIAGLIYFGDHVRVRCSVAGQEDCFVKLSLS--DPALS 359 N +A +Y GDHVRVR V G++D FVK ++ DP LS Sbjct: 304 NRFSGRVAEFVYLGDHVRVRLEVCGRDDFFVKQPIAELDPTLS 346 >YPO2846 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Ype Yersinia pestis Length = 361 Score = 394 bits (1011), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/358 (55%), Positives = 253/358 (70%), Gaps = 10/358 (2%) Query: 26 VQFCGVKKTYDGENLIVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRL 85 V F +KK+YDG+ L+VK+L+LDI G+FLTLLGPSGSGKTT LMMLAGFE PT GEI L Sbjct: 5 VSFKNIKKSYDGDKLVVKNLNLDIHEGDFLTLLGPSGSGKTTSLMMLAGFETPTQGEITL 64 Query: 86 DGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQ 145 + L+ +PPH+R IGMVFQNYALFPHMT+ +N+A+PL++R++++A + K+ + LDMV+ Sbjct: 65 RDKPLHNLPPHQRGIGMVFQNYALFPHMTVTENLAFPLTIRRLNKADIKEKIDRILDMVK 124 Query: 146 MGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKR 205 + DRYP Q+SGGQQQRVALAR LVF+P+LVLMDEPLGALDKQLREHMQLE+K LHK Sbjct: 125 LKNLADRYPAQMSGGQQQRVALARALVFEPKLVLMDEPLGALDKQLREHMQLEIKQLHKM 184 Query: 206 LGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFKG 265 L +T VYVTHDQSEA+T+S+RV VF+ G+IQQ+ + +YE P N FVA FIG+NN Sbjct: 185 LELTIVYVTHDQSEAMTLSNRVVVFNDGIIQQMDSPSVIYEQPSNTFVAQFIGENNCLLA 244 Query: 266 SVESVQGEHCTVRLADGTVVTGLNVHRAHAGQAITACVRPERIRL--AAGGSAEPNAIRA 323 + GE+ L DGT + L V + G+ I C+RPER+ + A GS + I+A Sbjct: 245 VNQGSDGEYYRAMLDDGTRLQALKVCPSSPGKKIMLCIRPERVSVNHPAAGSQQ---IKA 301 Query: 324 SIAGLIYFGDHVRVRCSVAGQEDCFVKLSLS--DPALSGLTEGSSVVLHTAQDRLRCF 379 I IY GDHVR+ VAGQ + VKLS + +P GS V+L LR Sbjct: 302 RIQQFIYLGDHVRMMTEVAGQGNFMVKLSAAHIEPHWQ---PGSEVLLSWMPAHLRAL 356 >BMEII0922 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Bme Brucella melitensis Length = 355 Score = 360 bits (925), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 174/318 (54%), Positives = 233/318 (73%), Gaps = 2/318 (0%) Query: 22 SDVLVQFCGVKKTYDGENLIVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGG 81 +D +F + K+Y G+ ++ L+LDI RGEF++LLGPSGSGKTT LMMLAGFE P+ G Sbjct: 2 TDYRTRFENISKSY-GDFKVIDGLNLDIERGEFVSLLGPSGSGKTTLLMMLAGFENPSSG 60 Query: 82 EIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQAL 141 I +DG+ +N VP +KRN+G+VFQNYALFPHMT+A+N+A+PL +R + +A KV + L Sbjct: 61 TIHVDGKSINSVPSYKRNMGVVFQNYALFPHMTVAENIAFPLQMRGVGKAQAAEKVARVL 120 Query: 142 DMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKA 201 DMVQ+ +R P+QLSGGQQQRVALAR LVF+P +VLMDEPLGALDKQLRE MQL+++A Sbjct: 121 DMVQLSAMSERKPSQLSGGQQQRVALARALVFEPHVVLMDEPLGALDKQLREQMQLDIRA 180 Query: 202 LHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNN 261 LH RLG+T V+VTHDQSEALTMSDR+AVF++G I+Q+ +Y+ P +FVA FIG+ N Sbjct: 181 LHNRLGLTIVFVTHDQSEALTMSDRIAVFNKGKIEQIGSPRAIYDEPQTRFVAEFIGETN 240 Query: 262 RFKGSVESVQGEHCTVRLADGTVVTGLNVHRAHAGQAITACVRPERIRLAAGGSAEPNAI 321 +G+VESV+G +RL D T + + R +GQ + +RPERI L AE N + Sbjct: 241 LAEGTVESVEGSRILIRLKDATAIAASSASRPISGQNVLLSIRPERIELGEADGAE-NRL 299 Query: 322 RASIAGLIYFGDHVRVRC 339 A + +Y GDH+R++ Sbjct: 300 AARVMDSVYQGDHLRIQL 317 >SMa1754 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Sme Sinorhizobium meliloti Length = 359 Score = 344 bits (883), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 170/318 (53%), Positives = 227/318 (71%), Gaps = 1/318 (0%) Query: 25 LVQFCGVKKTYDGENLIVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIR 84 +QF + K Y G +V++L L I +GEF++LLGPSGSGKTT LMMLAGFE PT G I Sbjct: 8 FIQFDRITKFY-GPLCVVENLVLGIGQGEFVSLLGPSGSGKTTLLMMLAGFEQPTSGNIL 66 Query: 85 LDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMV 144 LDG +N VP HKR++G+VFQ+YALFPHM++ +NVA+PL +R + +A V +ALDMV Sbjct: 67 LDGTAINDVPTHKRDMGVVFQSYALFPHMSVGENVAFPLQMRGLGKAEIAECVARALDMV 126 Query: 145 QMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHK 204 Q+ F DR P+QLSGGQQQRVAL+R LVF+P++VLMDEPLGALDKQLRE MQ +++ LH+ Sbjct: 127 QLSAFADRRPSQLSGGQQQRVALSRALVFEPRVVLMDEPLGALDKQLREQMQFDIRDLHR 186 Query: 205 RLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFK 264 RLG+T V+VTHDQSEALTMSDRVAVF++G I+Q+ ++Y+ P +FVA FIG+ N + Sbjct: 187 RLGLTIVFVTHDQSEALTMSDRVAVFNRGKIEQIGTPRQVYDEPATRFVAEFIGETNLVE 246 Query: 265 GSVESVQGEHCTVRLADGTVVTGLNVHRAHAGQAITACVRPERIRLAAGGSAEPNAIRAS 324 G VE+VQG+ VRL G + +GQ++ +RPER+ L+ N + Sbjct: 247 GVVETVQGQEAIVRLPSGAHIVSAGSGSLVSGQSVFLSIRPERVDLSETRGDARNCLETE 306 Query: 325 IAGLIYFGDHVRVRCSVA 342 + +Y GDH+RV+ A Sbjct: 307 VTDSVYQGDHLRVQLQSA 324