BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0839.p (283 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb21102 [K] COG1414 Transcriptional regulator Sme Sinorhizobium... 217 3e-56 BMEI1717 [K] COG1414 Transcriptional regulator Bme Brucella meli... 216 6e-56 mlr7155 [K] COG1414 Transcriptional regulator Mlo Mesorhizobium ... 209 5e-54 AGl810 [K] COG1414 Transcriptional regulator Atu Agrobacterium t... 197 2e-50 TM0065 [K] COG1414 Transcriptional regulator Tma Thermotoga mari... 73 6e-13 >SMb21102 [K] COG1414 Transcriptional regulator Sme Sinorhizobium meliloti Length = 260 Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 113/248 (45%), Positives = 160/248 (64%), Gaps = 2/248 (0%) Query: 31 RYAAPALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIFRMVVTLEQRGYLI-ADNDH 89 +Y APALDKGLDILELL+ + LT +IS++L RS NE +RM+ L +RGY+ D D Sbjct: 8 KYRAPALDKGLDILELLASVDGGLTQAEISKRLNRSPNEFYRMLDRLVRRGYVTRIDGDL 67 Query: 90 YRLSLKLFELAHHHQPIRSLVSTALPHMRELAQRSMQSTHLTVYEAGRVIVVAQVDSPER 149 Y L+LKLF LA H P+R L S A P MRELAQRS Q+ L V++ G +V+AQ ++P+ Sbjct: 68 YSLTLKLFGLAQLHAPVRRLASFATPLMRELAQRSKQANQLAVFDRGSAVVIAQQEAPDY 127 Query: 150 WAFGLKVGALVSLTDTASGHVLLAFRDEAERASMLAAHVRMDGEQEIETAQLMRQIEETR 209 W ++VG+ +SL DT SGHVLLAFR ER M++ HVR E + T + ++++ R Sbjct: 128 WGISIRVGSHISLFDTGSGHVLLAFRSPEEREMMISEHVRSRDEINL-TPEFYARLDQIR 186 Query: 210 KRGHSRMESRQIRGVVNLSYPVMGANNRMLAALNVPYIERIDKKVNPSLDEVQGIVQEVS 269 +RG+ M S Q GV NLS P++G + R +AAL PYI ++ P + E ++ + + Sbjct: 187 ERGYEMMASAQTAGVYNLSAPILGPDGRSIAALTCPYISLVNNPSAPDITETISLLLKTA 246 Query: 270 ARLSRLMG 277 ++LS L G Sbjct: 247 SQLSALAG 254 >BMEI1717 [K] COG1414 Transcriptional regulator Bme Brucella melitensis Length = 264 Score = 216 bits (549), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 111/248 (44%), Positives = 158/248 (63%), Gaps = 2/248 (0%) Query: 31 RYAAPALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIFRMVVTLEQRGYLIA-DNDH 89 RY APALDKGLDILELL+ + LT +I++ L RS NE +RM+ L +RGY+ D D Sbjct: 11 RYRAPALDKGLDILELLASVDGGLTQAEIAKHLDRSPNEFYRMLDRLVKRGYVTKLDGDR 70 Query: 90 YRLSLKLFELAHHHQPIRSLVSTALPHMRELAQRSMQSTHLTVYEAGRVIVVAQVDSPER 149 Y L+LKLF LA H P+R L S A P MRELA RS Q+ L V++ G V+V+AQ ++P+ Sbjct: 71 YSLTLKLFGLAQLHAPVRRLASFATPFMRELADRSKQANQLAVFDRGSVVVIAQQEAPDY 130 Query: 150 WAFGLKVGALVSLTDTASGHVLLAFRDEAERASMLAAHVRMDGEQEIETAQLMRQIEETR 209 W ++VG+ +SL DT SGHVLLAFR ER M+AAHV+ E ++ ++++ R Sbjct: 131 WGISIRVGSHISLFDTGSGHVLLAFRSPEEREMMIAAHVKSRDEVNLDQ-DFYDRLDQIR 189 Query: 210 KRGHSRMESRQIRGVVNLSYPVMGANNRMLAALNVPYIERIDKKVNPSLDEVQGIVQEVS 269 +RG+ M S Q+ G NLS P++G + +AAL PYI ++ P + + ++Q+ Sbjct: 190 ERGYEMMASAQMAGAYNLSAPILGPDGTCVAALTCPYITLVNPSSAPDITQTISLLQKTV 249 Query: 270 ARLSRLMG 277 LS+L+G Sbjct: 250 RDLSKLVG 257 >mlr7155 [K] COG1414 Transcriptional regulator Mlo Mesorhizobium loti Length = 261 Score = 209 bits (533), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 115/265 (43%), Positives = 166/265 (62%), Gaps = 9/265 (3%) Query: 20 EHEDEQGGAKTRYAAPALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIFRMVVTLEQ 79 + EDE RY APALDKGLDILELL+ + LT +I+++L RS NE +RM+ L + Sbjct: 3 DSEDE------RYRAPALDKGLDILELLAGVDGGLTQAEIAKKLDRSPNEFYRMLDRLVR 56 Query: 80 RGYLI-ADNDHYRLSLKLFELAHHHQPIRSLVSTALPHMRELAQRSMQSTHLTVYEAGRV 138 RGY+ D D Y L+LKLF LA H P+R LVS A P MRELA+ S Q+ L V++ G Sbjct: 57 RGYVTRLDGDRYSLTLKLFGLAQLHAPVRRLVSYATPLMRELAETSQQANQLVVFDRGSA 116 Query: 139 IVVAQVDSPERWAFGLKVGALVSLTDTASGHVLLAFRDEAERASMLAAHVRMDGEQEIET 198 +V+AQ ++P W ++VG+ +SL DT SGHVLLAFR + ER M++ HVR ++ ++ Sbjct: 117 VVIAQQEAPNYWGISIRVGSHISLFDTGSGHVLLAFRSQEERQMMISEHVR-STDKTAQS 175 Query: 199 AQLMRQIEETRKRGHSRMESRQIRGVVNLSYPVMGANNRMLAALNVPYIERIDKKVNPSL 258 + ++++ R RG+ M S Q GV NLS PV ++ + +AAL++PYI I+ P + Sbjct: 176 VEFFTRLDQIRDRGYEMMASMQTAGVFNLSAPVRSSDGKAIAALSIPYITVINTPSAPDI 235 Query: 259 DEVQGIVQEVSARLSRLMGDSSFGS 283 ++ + +LS L G S+ GS Sbjct: 236 TRTIELLLVTTEKLSHLAG-SAVGS 259 >AGl810 [K] COG1414 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 255 Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 105/247 (42%), Positives = 156/247 (63%), Gaps = 4/247 (1%) Query: 31 RYAAPALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIFRMVVTLEQRGYLI-ADNDH 89 RY APALDKGLDILELL+R++ LT +I++ +G+S NE++RM+ L +RGY+ D D Sbjct: 8 RYRAPALDKGLDILELLARTDGGLTQIEIAKAIGKSPNELYRMLDRLVRRGYVQRLDGDR 67 Query: 90 YRLSLKLFELAHHHQPIRSLVSTALPHMRELAQRSMQSTHLTVYEAGRVIVVAQVDSPER 149 + L+LK+F LAH H PIR LVS A P MR+ + + Q+ HL VY+ G V+V+AQ +S Sbjct: 68 FSLTLKMFGLAHFHAPIRRLVSFAAPVMRDFSASAEQACHLAVYDRGSVVVIAQQESATY 127 Query: 150 WAFGLKVGALVSLTDTASGHVLLAFRDEAERASMLAAHVRMDGEQEIETAQLMRQIEETR 209 WA ++VGA +SL T SGHVLLAF+ EA+R M+ VR G E A L ++ + R Sbjct: 128 WAMSMRVGAQMSLFHTGSGHVLLAFQTEAQREIMMTEQVR--GSGETVPADLAERLRQVR 185 Query: 210 KRGHSRMESRQIRGVVNLSYPVMGANNRMLAALNVPYIERIDKKVNPSLDEVQGIVQEVS 269 G M+S Q GV N+S P++ + LA + PYI + P+ + + ++++ + Sbjct: 186 SNGFESMDSLQTAGVRNISAPILTLDGTALAVITCPYITTLGGTA-PTRETCEQLIRDAA 244 Query: 270 ARLSRLM 276 R+S ++ Sbjct: 245 KRISEVV 251 >TM0065 [K] COG1414 Transcriptional regulator Tma Thermotoga maritima Length = 246 Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/245 (21%), Positives = 120/245 (48%), Gaps = 5/245 (2%) Query: 36 ALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIFRMVVTLEQRGYLIADNDH-YRLSL 94 L K +IL+ + ++ +++++I+ + SV+ ++ +V LE++G+++ D Y Sbjct: 3 TLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGY 62 Query: 95 KLFELAHHHQPIRSLVSTALPHMRELAQRSMQSTHLTVYEAGRVIVVAQVDSPERWAFGL 154 KL E ++ A H+ ++ +R+ ++ HL + + + + +V+ + Sbjct: 63 KLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKDGFEGVYIDKVEGEQSIPMVS 122 Query: 155 KVGALVSLTDTASGHVLLAFRDEAERASMLA-AHVRMDGEQEIETAQLM-RQIEETRKRG 212 ++G V L TASG +LAF E E L ++ I +++ R++E+ RKRG Sbjct: 123 RLGMKVDLYSTASGKSILAFVPEKELKEYLKIVELKPKTPNTITNPRVLKRELEKIRKRG 182 Query: 213 HSRMESRQIRGVVNLSYPVMGANNRMLAALNVPYIERIDKKVNPSLDEVQGIVQEVSARL 272 ++ G++ + P+ N +A +++ + R K ++E +++E + + Sbjct: 183 YAVDNEENEIGIMCVGVPIFDHNGYPVAGVSISGVAR--KFTEEKIEEYSDVLKEKAEEI 240 Query: 273 SRLMG 277 SR +G Sbjct: 241 SRKLG 245