BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0832.p (403 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0362 [G] COG4214 ABC-type xylose transport system, permease... 527 e-149 AGc4262 [G] COG4214 ABC-type xylose transport system, permease c... 496 e-140 SMb20893 [G] COG4214 ABC-type xylose transport system, permease ... 471 e-132 mll5656 [G] COG4214 ABC-type xylose transport system, permease c... 441 e-123 BH3440 [G] COG4214 ABC-type xylose transport system, permease co... 416 e-116 >BMEII0362 [G] COG4214 ABC-type xylose transport system, permease component Bme Brucella melitensis Length = 396 Score = 527 bits (1357), Expect = e-149, Method: Compositional matrix adjust. Identities = 270/391 (69%), Positives = 317/391 (81%), Gaps = 5/391 (1%) Query: 16 AAEKKDYGSFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNLVLQNSYIVIMAL 75 + ++ G +LKNN+RE GML+SLVAIM FF I+T G LM+PLNLTNLVLQNSYIVIMAL Sbjct: 8 SGQQSSVGRYLKNNLRESGMLLSLVAIMIFFHIVTGGVLMKPLNLTNLVLQNSYIVIMAL 67 Query: 76 GMLMVIVAGHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIVCLIAGGLIGAAQGYWIA 135 GML++IV GHIDLSVGSV G IGALAAV+MV G F A+I+CLI GGLIGA QG+W+A Sbjct: 68 GMLLIIVTGHIDLSVGSVCGFIGALAAVMMVKLGIPFPIAAILCLIVGGLIGAIQGFWVA 127 Query: 136 YFKIPSFIVTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSGFIPELTGNPTFR---TT 192 YF IPSFIVTLAGMLVFKG+ LA+L GQS+GPFP FQ LSSGFIPE+ G TF T Sbjct: 128 YFNIPSFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKLSSGFIPEVIG--TFDGVYLT 185 Query: 193 SLIVGVIAAVVLILVKLHGRRKQTKHGMEDEPVLFFLLKNALFAAAIIAFSYLLSTYRGM 252 SLI+GV+ AV LI + R + H +E EP F++K L+ AI S L+S++RGM Sbjct: 186 SLIIGVLLAVFLIWQSMRSRARHIAHEVETEPFGLFVVKCILYFVAIAYLSLLISSHRGM 245 Query: 253 PNVLIIMFALMVFYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTERVSFFTFVNMGVLAA 312 PNVLIIM L+ Y F+T+RT +GR++YAVGGN AAKLSG+KTER++F TFVNMGVLAA Sbjct: 246 PNVLIIMAVLIAAYAFLTNRTVIGRQIYAVGGNRHAAKLSGVKTERLTFLTFVNMGVLAA 305 Query: 313 LAGLIFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIGAFIMGVMNNGM 372 LAGL+FAARLNTATPKAG+GFELDVIAACFIGGASA GGVG+V GAVIGA IMGVMNNGM Sbjct: 306 LAGLVFAARLNTATPKAGIGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGM 365 Query: 373 SIMGIGIDYQQMIKGLVLLMAVCFDVYNKNK 403 SI+GIGIDYQQ+IKG+VLL AVC DVYN+ + Sbjct: 366 SILGIGIDYQQVIKGIVLLGAVCIDVYNQKR 396 >AGc4262 [G] COG4214 ABC-type xylose transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 398 Score = 496 bits (1277), Expect = e-140, Method: Compositional matrix adjust. Identities = 254/381 (66%), Positives = 315/381 (82%) Query: 23 GSFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNLVLQNSYIVIMALGMLMVIV 82 GS++++N+REYGML++LVAIM FFQ T G L RP+NLTNL+LQNS+IVIMALGML+VIV Sbjct: 17 GSYIRSNIREYGMLIALVAIMVFFQFYTGGILFRPVNLTNLILQNSFIVIMALGMLLVIV 76 Query: 83 AGHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIVCLIAGGLIGAAQGYWIAYFKIPSF 142 AGHIDLSVGS+V +GA+AA+L V +G A+++CL+ GG+IGAAQGYWIAY +IPSF Sbjct: 77 AGHIDLSVGSIVAFVGAIAAILTVQWGMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSF 136 Query: 143 IVTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSGFIPELTGNPTFRTTSLIVGVIAAV 202 IVTLAGMLVF+G+ L +L G+++GPFP FQ++S+GF+P++ G TTS+I+ V+ V Sbjct: 137 IVTLAGMLVFRGLTLFVLGGKNIGPFPTDFQVISTGFLPDIGGIEGLNTTSMILTVLITV 196 Query: 203 VLILVKLHGRRKQTKHGMEDEPVLFFLLKNALFAAAIIAFSYLLSTYRGMPNVLIIMFAL 262 L + R KHG++ EP FF+++N L + AI+ Y LSTYRG+PNVLI+M L Sbjct: 197 ALFYLAWRRRVVNVKHGIDVEPFGFFIVQNLLISGAILFLGYQLSTYRGLPNVLIVMLVL 256 Query: 263 MVFYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTERVSFFTFVNMGVLAALAGLIFAARL 322 + Y+F+T RTT+GRRVYA+GGNEKA KLSGI TER+SF TFVNMGVLA LAG+I A RL Sbjct: 257 IALYSFVTRRTTIGRRVYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRL 316 Query: 323 NTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIGAFIMGVMNNGMSIMGIGIDYQ 382 N+ATPKAG+GFELDVIAACFIGGASASGGVGK+ GAVIGAFIMGVMNNGMSI+G+GID+Q Sbjct: 317 NSATPKAGVGFELDVIAACFIGGASASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQ 376 Query: 383 QMIKGLVLLMAVCFDVYNKNK 403 QM+KGLVLL AV FDVYNKNK Sbjct: 377 QMVKGLVLLAAVFFDVYNKNK 397 >SMb20893 [G] COG4214 ABC-type xylose transport system, permease component Sme Sinorhizobium meliloti Length = 404 Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust. Identities = 251/402 (62%), Positives = 320/402 (79%), Gaps = 12/402 (2%) Query: 11 AVASGAAEKKDYGSFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNLVLQNSYI 70 A S K G +L+NN+REYG+L++LV IM FFQ +T+G L RP+N+TNLVLQNS+I Sbjct: 3 ADTSTETTKPSIGDYLRNNIREYGLLVALVIIMLFFQFVTNGVLFRPVNITNLVLQNSFI 62 Query: 71 VIMALGMLMVIVAGHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIV---CLIAGGLIG 127 VIMALGML++IVAGHIDLSVGS+V IGA++A+++V +G +PA +V CLI GG++G Sbjct: 63 VIMALGMLLIIVAGHIDLSVGSIVAFIGAISAIMLVKWG---LPAFVVIPACLIVGGIMG 119 Query: 128 AAQGYWIAYFKIPSFIVTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSGFIPELTG-- 185 AAQGYW+AY KIPSFIVTLAGMLVF+GM +L G+ +GPFP+ FQ+LS+GF+P+ Sbjct: 120 AAQGYWVAYQKIPSFIVTLAGMLVFRGMTYVVLGGRPIGPFPKDFQILSTGFVPDFLYFL 179 Query: 186 NPTFRTTSLIVGVIAAVVL----ILVKLHGRRKQTKHGMEDEPVLFFLLKNALFAAAIIA 241 +P+ T +V ++A ++L I + RR +HG E+EP +FF ++ A+ + + Sbjct: 180 SPSPETIKNMVALVAVLLLVGYAIFAGVRNRRINEQHGTENEPFVFFAIQMAVISLVALF 239 Query: 242 FSYLLSTYRGMPNVLIIMFALMVFYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTERVSF 301 + LSTYRG+PNVL++M L+ YTF+T+R+T+GRR+YA+GGNEKA KLSGI TER++F Sbjct: 240 LGFQLSTYRGLPNVLVVMGVLIAVYTFVTTRSTIGRRIYAMGGNEKATKLSGINTERLTF 299 Query: 302 FTFVNMGVLAALAGLIFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIG 361 + FVNMG LAALAG+I ARLN+ATPKAG+GFELDVIAACFIGGASASGGVGK+ GAVIG Sbjct: 300 YAFVNMGALAALAGMIITARLNSATPKAGVGFELDVIAACFIGGASASGGVGKITGAVIG 359 Query: 362 AFIMGVMNNGMSIMGIGIDYQQMIKGLVLLMAVCFDVYNKNK 403 AFIMGVMNNGMSIMGIGIDYQQ+IKGLVLL AV FDVYNKNK Sbjct: 360 AFIMGVMNNGMSIMGIGIDYQQLIKGLVLLAAVFFDVYNKNK 401 >mll5656 [G] COG4214 ABC-type xylose transport system, permease component Mlo Mesorhizobium loti Length = 428 Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/424 (55%), Positives = 300/424 (70%), Gaps = 27/424 (6%) Query: 7 SKKPAVASGAAEKKDYG---SFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNL 63 PA AE + S L N+REYG++++L+ IM FFQ T GTL +P+NL+NL Sbjct: 4 DSAPAPQGNIAEDQRPRIAVSALTTNLREYGLIIALIVIMLFFQFTTSGTLFKPVNLSNL 63 Query: 64 VLQNSYIVIMALGMLMVIVAGHIDLSVGSVVGLIGALAAVLMVDYGWGFVP----ASIVC 119 V QNS+I++MALGML+VIV+G+IDLSVGSV G IGALAA +MV + G + SIVC Sbjct: 64 VQQNSFIIVMALGMLLVIVSGYIDLSVGSVAGFIGALAANMMVIWQLGPLSNPLVVSIVC 123 Query: 120 LIAGGLIGAAQGYWIAYFKIPSFIVTLAGMLVFKGMALALLQG-QSLGPFPQTFQMLSSG 178 LI GGLIGAAQGYWIAY +IPSFIVTLAGML+F+G+ ALL G S+GP P F+ LSSG Sbjct: 124 LIVGGLIGAAQGYWIAYHRIPSFIVTLAGMLIFRGICQALLGGGSSVGPLPDGFKALSSG 183 Query: 179 FIPELTGN-----PT--------------FRTTSLIVGVIAAVVLILVKLHGRRKQTKHG 219 FIP++ G PT T++++G+IA V + RRK+ +HG Sbjct: 184 FIPDVIGPLTLIPPTVNAAGKTIVGSGLTLHMTTIVLGLIAVVAYAYFGVRTRRKRERHG 243 Query: 220 MEDEPVLFFLLKNALFAAAIIAFSYLLSTYRGMPNVLIIMFALMVFYTFITSRTTLGRRV 279 E EP F++K + +A + Y ++YRG+P VL++M L+ + F+T R T+GRR+ Sbjct: 244 YEAEPFPLFVIKTLVASALALFLVYEFASYRGLPVVLLVMGVLISLFVFVTKRMTIGRRI 303 Query: 280 YAVGGNEKAAKLSGIKTERVSFFTFVNMGVLAALAGLIFAARLNTATPKAGLGFELDVIA 339 YA+GGN KAA+LSGI TER++ F+NMGVL+AL GLI AARL A P AGLG ELDVIA Sbjct: 304 YAMGGNPKAAQLSGINTERLTLLVFINMGVLSALGGLIIAARLGQAVPAAGLGSELDVIA 363 Query: 340 ACFIGGASASGGVGKVMGAVIGAFIMGVMNNGMSIMGIGIDYQQMIKGLVLLMAVCFDVY 399 A FIGGASA GGVG+V+GAV+G FIMGVMNNGMSIMG+ +D+QQ++KGLVLL AV FDVY Sbjct: 364 AVFIGGASAMGGVGQVIGAVVGGFIMGVMNNGMSIMGVNVDWQQVVKGLVLLGAVIFDVY 423 Query: 400 NKNK 403 NKNK Sbjct: 424 NKNK 427 >BH3440 [G] COG4214 ABC-type xylose transport system, permease component Bha Bacillus halodurans Length = 388 Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust. Identities = 209/382 (54%), Positives = 298/382 (78%), Gaps = 2/382 (0%) Query: 24 SFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNLVLQNSYIVIMALGMLMVIVA 83 LKNNMR YGM+++L+ I+ F +++DG L+RPLN+TNL+LQNSYI+++A+GM+MVI+A Sbjct: 5 ELLKNNMRSYGMIVALMFIILLFSVLSDGILLRPLNVTNLILQNSYILVLAIGMVMVIIA 64 Query: 84 GHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIVCLIAGGLIGAAQGYWIAYFKIPSFI 143 GHIDLSVGSV +GA+AA+LM+D A ++CL+ G LIGA G++IAY K+PSFI Sbjct: 65 GHIDLSVGSVCAFVGAIAAILMIDMQLPTALAVLICLLLGALIGAWHGFFIAYLKMPSFI 124 Query: 144 VTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSGFIPELT--GNPTFRTTSLIVGVIAA 201 VTLAGML+F+G+ + +L GQS P+P F ++SSGF+P++ G ++ T ++++GV+ + Sbjct: 125 VTLAGMLLFRGLTMVVLGGQSKSPYPPEFILISSGFLPDIPFLGLASYHTLTMLIGVVLS 184 Query: 202 VVLILVKLHGRRKQTKHGMEDEPVLFFLLKNALFAAAIIAFSYLLSTYRGMPNVLIIMFA 261 + +I +L RR Q + P FF+ K A I F+++L++YRG+PN+L+I+F Sbjct: 185 LFVIFSELKERRVQINNQFMVLPKGFFIAKLIGMVAIINIFTFVLASYRGIPNILVILFV 244 Query: 262 LMVFYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTERVSFFTFVNMGVLAALAGLIFAAR 321 L+V ++F+ ++T +GR +YA GGN+KAA+LSG+KT+RV+F+ FVNMG L+A+AGLI+AAR Sbjct: 245 LIVLFSFVMNKTVIGRHIYATGGNQKAAELSGVKTKRVTFWVFVNMGFLSAMAGLIYAAR 304 Query: 322 LNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIGAFIMGVMNNGMSIMGIGIDY 381 LN+ATP+AG FELD IAA FIGGAS +GGVG ++GAV+G +MGVMNNGMS++GI ID+ Sbjct: 305 LNSATPRAGTMFELDAIAAAFIGGASMAGGVGTIVGAVVGGLVMGVMNNGMSLLGISIDW 364 Query: 382 QQMIKGLVLLMAVCFDVYNKNK 403 QQ IKGLVLL AV FD+YN+NK Sbjct: 365 QQAIKGLVLLAAVGFDIYNRNK 386