BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0830.p (357 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc4267 [G] COG4213 ABC-type xylose transport system, periplasmi... 548 e-156 SMb20895 [G] COG4213 ABC-type xylose transport system, periplasm... 518 e-146 BH3442 [G] COG4213 ABC-type xylose transport system, periplasmic... 450 e-126 mll5659 [G] COG4213 ABC-type xylose transport system, periplasmi... 415 e-116 BMEII0360 [G] COG4213 ABC-type xylose transport system, periplas... 357 2e-98 >AGc4267 [G] COG4213 ABC-type xylose transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 354 Score = 548 bits (1412), Expect = e-156, Method: Compositional matrix adjust. Identities = 265/330 (80%), Positives = 297/330 (90%) Query: 28 QSKALVGVAMPTKSSARWIADGNNMVKVLKEKGYQTDLQYAEDDIPNQLSQIENMLTKGA 87 Q K VG+AMPTKSSARWI DGNN+VK L+E GY+TDLQYA+DDIPNQLSQIENM+TKG Sbjct: 25 QDKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGV 84 Query: 88 KVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRLIRGSKNVDYYATFDNFQVGVLQAQSLE 147 KVLVIA+IDGTTL+DVL++A ++G+KVIAYDRLIR S +V YYATFDNFQVGVLQA S+ Sbjct: 85 KVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNSGDVSYYATFDNFQVGVLQATSIT 144 Query: 148 KALGLKEGKGPFNIELFGGSSDDNNAFFFYNGAMSVLKPYIDSGKLVVRSKQMGMDKVAT 207 LGLK+GKGPFNIELFGGS DDNNAFFFY+GAMSVLKPYIDSGKLVV+S QMGMDKV T Sbjct: 145 DKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGT 204 Query: 208 LRWDPATAQARMDNLLSAFYTNAKVNAVLSPYDGLSIGILSSLRGVGYGTPQQPFPYVSG 267 LRWDPATAQARMDNLLSA+YT+AKV+AVLSPYDGLSIGI+SSL+GVGYGT QP P VSG Sbjct: 205 LRWDPATAQARMDNLLSAYYTDAKVDAVLSPYDGLSIGIISSLKGVGYGTKDQPLPVVSG 264 Query: 268 QDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVGMVDALLGGKQPQINDTKTYNNGVKVVP 327 QDAEVPSVKSII GEQYSTIFKDTRELAKVTV MV+A++ GK+P++NDTKTY NGVKVVP Sbjct: 265 QDAEVPSVKSIIAGEQYSTIFKDTRELAKVTVNMVNAVMEGKEPEVNDTKTYENGVKVVP 324 Query: 328 SYLLKPVVVDKSNWKEILVGSGYYTEAQLK 357 SYLLKPV V K N+K++LV GYY E QLK Sbjct: 325 SYLLKPVAVTKENYKQVLVDGGYYKEDQLK 354 >SMb20895 [G] COG4213 ABC-type xylose transport system, periplasmic component Sme Sinorhizobium meliloti Length = 355 Score = 518 bits (1333), Expect = e-146, Method: Compositional matrix adjust. Identities = 249/341 (73%), Positives = 291/341 (85%) Query: 16 VTLMSISAQVSAQSKALVGVAMPTKSSARWIADGNNMVKVLKEKGYQTDLQYAEDDIPNQ 75 +T+ +A AQ K +VG++MPTK+S RWI+DG M K+ KE GY DLQ+A+DDIPNQ Sbjct: 13 ITVAGFAAPAVAQEKGMVGISMPTKTSTRWISDGETMEKLFKEAGYTPDLQFADDDIPNQ 72 Query: 76 LSQIENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRLIRGSKNVDYYATFDN 135 L+QIENM+TKGAKVLVI AIDGTTL+D+LQKAAD GVKVIAYDRLIR S NVDYYATFDN Sbjct: 73 LAQIENMVTKGAKVLVIGAIDGTTLSDILQKAADAGVKVIAYDRLIRDSGNVDYYATFDN 132 Query: 136 FQVGVLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGAMSVLKPYIDSGKLVV 195 FQVGVLQA SL + L L P N+ELFGGS DDNNAFFFY+GAMSVL+P IDSGK+VV Sbjct: 133 FQVGVLQATSLVEGLKLDSATEPKNVELFGGSPDDNNAFFFYDGAMSVLQPLIDSGKIVV 192 Query: 196 RSKQMGMDKVATLRWDPATAQARMDNLLSAFYTNAKVNAVLSPYDGLSIGILSSLRGVGY 255 +S QMGMD+V TLRWD A AQARM+NLLS+ YT+AKV+ VLSPYDGLSIGI+S+L+GVGY Sbjct: 193 KSGQMGMDQVGTLRWDGAVAQARMENLLSSAYTDAKVDGVLSPYDGLSIGIISALKGVGY 252 Query: 256 GTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVGMVDALLGGKQPQIND 315 G+ P P V+GQDAE+PSVKSI+ GEQYST+FKDTRELAKVTV MV+A++ GK+P++ND Sbjct: 253 GSGDMPMPIVTGQDAELPSVKSILAGEQYSTVFKDTRELAKVTVNMVNAIMDGKEPEVND 312 Query: 316 TKTYNNGVKVVPSYLLKPVVVDKSNWKEILVGSGYYTEAQL 356 TKTY NGVKVVPSYLLKPV VDKSN K++LVGSGYYTE QL Sbjct: 313 TKTYENGVKVVPSYLLKPVSVDKSNAKDVLVGSGYYTEDQL 353 >BH3442 [G] COG4213 ABC-type xylose transport system, periplasmic component Bha Bacillus halodurans Length = 359 Score = 450 bits (1157), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/361 (61%), Positives = 280/361 (77%), Gaps = 7/361 (1%) Query: 1 MKIKSVLGGIALGLGVTLMSISAQ----VSAQSKALVGVAMPTKSSARWIADGNNMVKVL 56 MK K + G I L +T++ ++A S VG++MPT+SS RWIADGNNMV+ Sbjct: 1 MKKKWLWGSI---LYLTVLVLTACGGEGASGDGSGTVGISMPTQSSERWIADGNNMVEQF 57 Query: 57 KEKGYQTDLQYAEDDIPNQLSQIENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIA 116 + GY+T+LQY ED I NQ+ QIENM+T+G LVIAAIDG +LT+VL+ A + VI+ Sbjct: 58 EALGYETNLQYGEDVIENQIDQIENMITRGVDALVIAAIDGESLTEVLELAHSMEIPVIS 117 Query: 117 YDRLIRGSKNVDYYATFDNFQVGVLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFF 176 YDRLIR S++V YYATFDN+QVGVL+ + +E LGL EG+GPFNIELF GS DDNNA+FF Sbjct: 118 YDRLIRNSEHVSYYATFDNYQVGVLKGEYIEGYLGLDEGEGPFNIELFAGSPDDNNAYFF 177 Query: 177 YNGAMSVLKPYIDSGKLVVRSKQMGMDKVATLRWDPATAQARMDNLLSAFYTNAKVNAVL 236 ++GAMSVL+PYID+G+LVV+S Q +VATLRWD + AQ RMDNLLS FYT+ ++AVL Sbjct: 178 FDGAMSVLQPYIDNGQLVVQSGQTDFQQVATLRWDGSLAQERMDNLLSGFYTDKTLDAVL 237 Query: 237 SPYDGLSIGILSSLRGVGYGTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAK 296 SPYDG+SIGI+SSL+GVGYG+ P P V+GQDAE PS+ SII GEQ TIFKDTRELA Sbjct: 238 SPYDGISIGIISSLKGVGYGSGDLPMPVVTGQDAERPSIASIIAGEQTQTIFKDTRELAG 297 Query: 297 VTVGMVDALLGGKQPQINDTKTYNNGVKVVPSYLLKPVVVDKSNWKEILVGSGYYTEAQL 356 V MVDA+L G++P++NDT+TY NGVKVVPSYLL+P+ VD +N+KE+LVGSGYY E+ Sbjct: 298 KAVEMVDAVLKGEEPEVNDTETYENGVKVVPSYLLEPISVDINNYKEVLVGSGYYDESDF 357 Query: 357 K 357 + Sbjct: 358 E 358 >mll5659 [G] COG4213 ABC-type xylose transport system, periplasmic component Mlo Mesorhizobium loti Length = 356 Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust. Identities = 225/343 (65%), Positives = 264/343 (76%), Gaps = 8/343 (2%) Query: 19 MSISAQVSAQSKALVGVAMPTKSSARWIADGNNMVKVLKEKGYQTDLQYAEDDIPNQLSQ 78 M+ SA A K LVGV MPTK+S RWI DG+ + L+ GY DLQYA+DDIPNQLSQ Sbjct: 18 MTYSAH--AADKGLVGVLMPTKTSQRWINDGDAVKSQLEALGYTVDLQYAQDDIPNQLSQ 75 Query: 79 IENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRLIRGSKNVDYYATFDNFQV 138 +EN +TKG K L+IA+IDGTTL+D LQKAAD GV V+AYDRLI+ + NVDYY TFDNF V Sbjct: 76 LENEITKGPKALIIASIDGTTLSDALQKAADAGVVVVAYDRLIKKTANVDYYTTFDNFGV 135 Query: 139 GVLQAQSLEKALGLKE---GKGPFNIELFGGSSDDNNAFFFYNGAMSVLKPYIDSGKLVV 195 GV+QA SL K GLKE P+N+ELFGGS DDNNAFFFYNGA+SVL+P ID G + + Sbjct: 136 GVIQANSLVK--GLKERFPNTKPWNVELFGGSPDDNNAFFFYNGAISVLQPLIDDGSIKI 193 Query: 196 RSKQMGMDKVATLRWDPATAQARMDNLLSAFYTN-AKVNAVLSPYDGLSIGILSSLRGVG 254 +S QMGMDKV TLRW ATAQARMDNLLSA Y++ ++V+ VLSPYDGLS GI +SLR VG Sbjct: 194 KSGQMGMDKVGTLRWLAATAQARMDNLLSANYSDGSRVDGVLSPYDGLSRGITASLRAVG 253 Query: 255 YGTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVGMVDALLGGKQPQIN 314 YGT QP+P V+GQDAE SVK II GEQYST+FKDTRELAK TV +VD +L G +P Sbjct: 254 YGTAAQPWPVVTGQDAETASVKLIISGEQYSTVFKDTRELAKSTVELVDKVLSGGKPDGL 313 Query: 315 DTKTYNNGVKVVPSYLLKPVVVDKSNWKEILVGSGYYTEAQLK 357 DTKTYNN VKVVPS LL P VDKSN+++++V SGY LK Sbjct: 314 DTKTYNNDVKVVPSILLTPHEVDKSNYQKLVVDSGYIKAEDLK 356 >BMEII0360 [G] COG4213 ABC-type xylose transport system, periplasmic component Bme Brucella melitensis Length = 218 Score = 357 bits (916), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 172/218 (78%), Positives = 196/218 (89%) Query: 140 VLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGAMSVLKPYIDSGKLVVRSKQ 199 +LQAQS+EKAL LK GPFNIELFGGS DDNNA+FFYNGAMSVL+PYIDSGKLVV S Q Sbjct: 1 MLQAQSIEKALDLKNKPGPFNIELFGGSPDDNNAYFFYNGAMSVLQPYIDSGKLVVGSGQ 60 Query: 200 MGMDKVATLRWDPATAQARMDNLLSAFYTNAKVNAVLSPYDGLSIGILSSLRGVGYGTPQ 259 GMDKVATLRWD ATAQARMD++LSA+Y++ K++AVLSPYDG+SIGILSSL+GVGYG+ Sbjct: 61 TGMDKVATLRWDGATAQARMDSILSAYYSDKKLDAVLSPYDGISIGILSSLKGVGYGSGD 120 Query: 260 QPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVGMVDALLGGKQPQINDTKTY 319 P P VSGQDAE+PSVKSI+ GEQ STIFKDTRELAKVTV MVDAL+ GK+P++NDTKTY Sbjct: 121 MPMPVVSGQDAEIPSVKSILAGEQNSTIFKDTRELAKVTVDMVDALMTGKEPEVNDTKTY 180 Query: 320 NNGVKVVPSYLLKPVVVDKSNWKEILVGSGYYTEAQLK 357 NNGVKVVPSYLLKPV+VDKSNWK++LV SGYY E Q+K Sbjct: 181 NNGVKVVPSYLLKPVIVDKSNWKQVLVDSGYYKEDQIK 218