BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0828.p (359 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3906 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 288 9e-78 AGl3181 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 281 2e-75 SMb21589 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-typ... 262 7e-70 ZytfT [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type t... 238 1e-62 ECs5207 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 238 1e-62 >YPO3906 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ype Yersinia pestis Length = 339 Score = 288 bits (738), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 168/313 (53%), Positives = 219/313 (69%), Gaps = 13/313 (4%) Query: 36 ALALLLLIDFLLVPGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATRGVDISV 95 ALA++LLID L+ P FF + I+DG L+G++IDI+NR AP+ L ALGMTLVIAT G+D+SV Sbjct: 28 ALAVILLIDSLVAPHFFSIHIQDGRLFGSIIDILNRGAPVALLALGMTLVIATGGIDLSV 87 Query: 96 GAVVAISGAVAAILIGGKMVVVNGVPEYVSNVPMLWALCAAMSAALLCGAWNGLLVAGLG 155 GAV+AI+GA AA L + P + L +++ LCG WNG LVA L Sbjct: 88 GAVMAIAGATAATLTS-------------AGYPFMTVLALSLAVGALCGLWNGFLVAVLQ 134 Query: 156 LQPIIATLILMVAGRGLAQLFTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAGAMFLLLA 215 +QPI+ATL+LMVAGRG+AQL T+GQIVT LG L LP S+ IA +M +L+ Sbjct: 135 IQPIVATLMLMVAGRGIAQLITEGQIVTFDSGGLATLGSSTLMYLPMSVVIACSMLILVW 194 Query: 216 LLMKKTALGLFIESVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASNIKSADA 275 LL +KTALGLFIESVGIN ++R AG+ T ++ VY+ C CA +AG+++ ++I+ ADA Sbjct: 195 LLTRKTALGLFIESVGINLRSARNAGVSTRLVLIAVYVICGVCAAVAGIIVTADIRGADA 254 Query: 276 NNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVK 335 NNAGL LELDAILAV +GG SL GG+F+L+ SVIGALIIQ + I G PE N+V+K Sbjct: 255 NNAGLWLELDAILAVVIGGASLMGGRFNLLLSVIGALIIQGMNTGILLSGYQPEFNLVLK 314 Query: 336 SIVVFLVCLSQSP 348 +IVV V + QSP Sbjct: 315 AIVVLAVLVVQSP 327 >AGl3181 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 348 Score = 281 bits (718), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 165/341 (48%), Positives = 229/341 (67%), Gaps = 15/341 (4%) Query: 21 MLAALLRH--PLVRPLAALALLLLIDFLLVPGFFKLEIKDGHLYGALIDIINRAAPLMLA 78 M+ A+ R L LAAL ++L ++ PGF + +++G LYG+LIDI+ RAAP+ L Sbjct: 1 MMVAVTRRLKRLAPQLAALFIILAAITIISPGFLDVSLQNGRLYGSLIDILVRAAPVALL 60 Query: 79 ALGMTLVIATRGVDISVGAVVAISGAVAAILIGGKMVVVNGVPEYVSNVPMLWALCAAMS 138 +GMTLVIAT+G+D+S+GAV+AI GAVAA LI NG ++P + A+ A+ Sbjct: 61 TIGMTLVIATKGIDLSIGAVIAICGAVAATLIS------NG-----HSIPAVLAVSLAVG 109 Query: 139 AALLCGAWNGLLVAGLGLQPIIATLILMVAGRGLAQLFTDGQIVTVYYKPFFFLGGGYLF 198 A CG WNG+LVA L +QPIIATLILMVAGRG+AQL T+G I+T F +G G Sbjct: 110 IA--CGLWNGVLVALLDIQPIIATLILMVAGRGIAQLITEGVILTFNDDGFAAIGSGSFA 167 Query: 199 GLPFSLYIAGAMFLLLALLMKKTALGLFIESVGINPVASRLAGIRTAALIFFVYMFCSAC 258 G+P + I A L++ +L++K+ALG IE+ GIN A+ LAG+R L+FFVY C Sbjct: 168 GVPLPVIIWVAAALVIGVLVRKSALGFLIEATGINRRAAALAGVRARFLLFFVYAVSGLC 227 Query: 259 AGLAGLMIASNIKSADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQTLT 318 A +AG+++ ++I+ ADANNAGL LELDAILAV +GGTSL GG+FS+ S+IGALIIQT+ Sbjct: 228 AAIAGMIVTADIRGADANNAGLWLELDAILAVVIGGTSLNGGRFSITASLIGALIIQTIN 287 Query: 319 YTIYSLGVPPEVNMVVKSIVVFLVCLSQSPEFRRMLRMSKS 359 I G PPE N+++K+ ++ +V QSP +L ++ Sbjct: 288 TGILVSGFPPEFNLIIKAGIIMVVLTLQSPAIMAVLGFVRT 328 >SMb21589 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Sme Sinorhizobium meliloti Length = 341 Score = 262 bits (670), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 158/322 (49%), Positives = 222/322 (68%), Gaps = 13/322 (4%) Query: 30 LVRPLAALALLLLIDFLLVPGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATR 89 L+ L ALA +++ ++ PGF L+I++G LYG+++DI+NR AP++L A+GMT+VIAT+ Sbjct: 12 LLPQLIALAAIVVAISIVFPGFLNLQIQNGRLYGSMVDILNRGAPVVLLAIGMTVVIATK 71 Query: 90 GVDISVGAVVAISGAVAAILIGGKMVVVNGVPEYVSNVPMLWALCAAMSAALLCGAWNGL 149 G+D+SVGAV+AI GAVAA LI S + L A ++ ++CG WNG+ Sbjct: 72 GIDLSVGAVMAICGAVAASLI-------------TSGHSLAETLLATLAVGIVCGIWNGV 118 Query: 150 LVAGLGLQPIIATLILMVAGRGLAQLFTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAGA 209 LVA L +QPIIATL+LMVAGRG+AQL T+G I+T F+G G GLP L I Sbjct: 119 LVAVLDIQPIIATLVLMVAGRGIAQLITEGTILTFNDPGLIFIGSGSFAGLPMPLVIWLV 178 Query: 210 MFLLLALLMKKTALGLFIESVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASN 269 LL+ALL+++TALG+ IE++GIN AS L+G+ T L+ Y+ CA +AG++ A++ Sbjct: 179 FGLLVALLVRRTALGMLIEAIGINRQASTLSGVLTPVLLVAAYVLSGLCAAIAGIIAAAD 238 Query: 270 IKSADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPE 329 I+ ADANNAGL LELDAILAV +GGTSL GG+FS+ SV+GA+IIQ + I G PPE Sbjct: 239 IRGADANNAGLWLELDAILAVVVGGTSLLGGRFSIAASVLGAVIIQAINTGILLSGFPPE 298 Query: 330 VNMVVKSIVVFLVCLSQSPEFR 351 N+++K+ ++ + + QSP FR Sbjct: 299 FNLIIKAAIIIFILVLQSPRFR 320 >ZytfT [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components EcZ Escherichia coli O157:H7 EDL933 Length = 341 Score = 238 bits (608), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 151/311 (48%), Positives = 209/311 (67%), Gaps = 13/311 (4%) Query: 49 PGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATRGVDISVGAVVAISGAVAAI 108 P F+++ ++DG L+G+ IDI+NRAAP+ L A+GMTLVIAT G+D+SVGAV+AI+GA A Sbjct: 40 PHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAA 99 Query: 109 LIGGKMVVVNGVPEYVSNVPMLWALCAAMSAALLCGAWNGLLVAGLGLQPIIATLILMVA 168 + V+ + L +A+ +L G WNG+LVA L +QP +ATLILMVA Sbjct: 100 M-------------TVAGFSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVA 146 Query: 169 GRGLAQLFTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAGAMFLLLALLMKKTALGLFIE 228 GRG+AQL T GQI+T + G G L LP + IA +L LL +KTALG+FIE Sbjct: 147 GRGVAQLITSGQIITFNSPDLSWFGSGSLLFLPTPVIIAVLTLILFWLLTRKTALGMFIE 206 Query: 229 SVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASNIKSADANNAGLLLELDAIL 288 +VGIN A++ AG+ T ++ Y+ CA +AG+++A++I+ ADANNAGL LELDAIL Sbjct: 207 AVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAIL 266 Query: 289 AVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVKSIVVFLVCLSQSP 348 AV +GG SL GG+F+L+ SV+GALIIQ + I G PPE+N VVK++VV V + QS Sbjct: 267 AVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQ 326 Query: 349 EFRRMLRMSKS 359 F +++ +S Sbjct: 327 RFISLIKGVRS 337 >ECs5207 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ecs Escherichia coli O157:H7 Length = 341 Score = 238 bits (608), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 151/311 (48%), Positives = 209/311 (67%), Gaps = 13/311 (4%) Query: 49 PGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATRGVDISVGAVVAISGAVAAI 108 P F+++ ++DG L+G+ IDI+NRAAP+ L A+GMTLVIAT G+D+SVGAV+AI+GA A Sbjct: 40 PHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAA 99 Query: 109 LIGGKMVVVNGVPEYVSNVPMLWALCAAMSAALLCGAWNGLLVAGLGLQPIIATLILMVA 168 + V+ + L +A+ +L G WNG+LVA L +QP +ATLILMVA Sbjct: 100 M-------------TVAGFSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVA 146 Query: 169 GRGLAQLFTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAGAMFLLLALLMKKTALGLFIE 228 GRG+AQL T GQI+T + G G L LP + IA +L LL +KTALG+FIE Sbjct: 147 GRGVAQLITSGQIITFNSPDLSWFGSGSLLFLPTPVIIAVLTLILFWLLTRKTALGMFIE 206 Query: 229 SVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASNIKSADANNAGLLLELDAIL 288 +VGIN A++ AG+ T ++ Y+ CA +AG+++A++I+ ADANNAGL LELDAIL Sbjct: 207 AVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAIL 266 Query: 289 AVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVKSIVVFLVCLSQSP 348 AV +GG SL GG+F+L+ SV+GALIIQ + I G PPE+N VVK++VV V + QS Sbjct: 267 AVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQ 326 Query: 349 EFRRMLRMSKS 359 F +++ +S Sbjct: 327 RFISLIKGVRS 337