BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0820.p         (181 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc466 [K] COG1846 Transcriptional regulators Atu Agrobacterium ...   158   7e-39
mlr3448 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium...   153   2e-37
SMc00380 [K] COG1846 Transcriptional regulators Sme Sinorhizobiu...   150   1e-36
alr7168 [K] COG1846 Transcriptional regulators Nos Nostoc sp. PC...   142   5e-34
RSc2325 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...   139   2e-33

>AGc466 [K] COG1846 Transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 168

 Score =  158 bits (399), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 111/165 (67%)

Query: 6   AQRPRDAVDVILEQWRRERPDLDASPMGPIGRLKRCAVLLEQAVEAGFAQFGLTLWEFDM 65
           +++P D VD IL QWR+ERPDLD  PMG +GRL R +  L + VEA   + GL+   FD+
Sbjct: 4   SKKPMDHVDHILAQWRKERPDLDVGPMGLLGRLHRLSTYLGREVEAVLLKHGLSSSAFDV 63

Query: 66  LAALRRSGSPYRLTPTELFSTLMVTSGTMTHRLKRLEAQGWIERVANEEDARSMLVQLTR 125
           LA LRR+GSPY+L+P +L +  MV+SGTMT+R+ +LE  G +ER+ N +D RS+L+ LT 
Sbjct: 64  LATLRRAGSPYQLSPGDLLAMTMVSSGTMTNRIDQLEKAGLVERIHNPQDRRSVLISLTE 123

Query: 126 KGLALINRAVQAHVENERWLLSALSADAVAGLDAHLSTLLLALEK 170
           +G A++  AV AHV+N+  L++ LS +    LD  L   L   E+
Sbjct: 124 RGFAIVEEAVGAHVDNQHRLVAHLSEEERDTLDGLLKRFLQDFEE 168


>mlr3448 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 164

 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 105/158 (66%), Gaps = 8/158 (5%)

Query: 17  LEQWRRERPDLDASPMGPIGRLKRCAVLLEQAVEAG-FAQFGLTLWEFDMLAALRRSGSP 75
           +EQW+RERPDLD SPMG +GRL   + L+ +   A  FAQFGL   EFD+LA LRRSGSP
Sbjct: 11  IEQWKRERPDLDVSPMGVLGRLNEASSLIARDRLAPLFAQFGLQAGEFDVLATLRRSGSP 70

Query: 76  YRLTPTELFSTLMVTSGTMTHRLKRLEAQGWIERVANEEDARSMLVQLTRKGLALINRAV 135
           Y LTPT+L+   MVTSG MT+RL RLE  G I R  +  D R ++VQLT KGLALI+ A+
Sbjct: 71  YALTPTDLYEATMVTSGAMTNRLDRLEKAGLILRGPHPNDRRGIVVQLTGKGLALIDEAL 130

Query: 136 QAHVENERWLLSALSADAVAGLDAHLSTLLLALEKPVG 173
            AHV NE  +L+ L+       DA   TL   LEK +G
Sbjct: 131 TAHVANEHEILAGLN-------DAERETLSRLLEKLIG 161


>SMc00380 [K] COG1846 Transcriptional regulators Sme Sinorhizobium meliloti
          Length = 164

 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/159 (50%), Positives = 103/159 (64%)

Query: 11  DAVDVILEQWRRERPDLDASPMGPIGRLKRCAVLLEQAVEAGFAQFGLTLWEFDMLAALR 70
           D VD IL QWRRERP+LDA+ MG +GRL R    L + VE+  A  GL    FD+LA LR
Sbjct: 6   DHVDKILAQWRRERPELDATAMGLLGRLSRLRAHLAREVESTLADHGLNSASFDVLATLR 65

Query: 71  RSGSPYRLTPTELFSTLMVTSGTMTHRLKRLEAQGWIERVANEEDARSMLVQLTRKGLAL 130
           RSG P+RL+P +L  T MVTSGTMT+R+ +LE  G +ER+ N ED R +L+ LT +GL  
Sbjct: 66  RSGPPFRLSPGDLLGTTMVTSGTMTNRIDQLEKAGLVERLDNPEDRRGVLIALTPEGLKR 125

Query: 131 INRAVQAHVENERWLLSALSADAVAGLDAHLSTLLLALE 169
           ++ AV AHV N++ L++ L  D    LDA L   L   E
Sbjct: 126 VDAAVTAHVANQQRLVAGLEPDEREALDALLRKFLAVFE 164


>alr7168 [K] COG1846 Transcriptional regulators Nos Nostoc sp. PCC 7120
          Length = 169

 Score =  142 bits (357), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 106/161 (65%)

Query: 10  RDAVDVILEQWRRERPDLDASPMGPIGRLKRCAVLLEQAVEAGFAQFGLTLWEFDMLAAL 69
           +D +D+ILE+W++E P LD S +   GR+ R A LLE+  E+   ++GL +W FD+LA L
Sbjct: 3   KDRIDIILEEWQQELPQLDTSAVSITGRVLRIARLLEKHRESILIEYGLNVWSFDVLATL 62

Query: 70  RRSGSPYRLTPTELFSTLMVTSGTMTHRLKRLEAQGWIERVANEEDARSMLVQLTRKGLA 129
           RR G P+RL PTEL+S LM++SG MT+R+ RLE  G + RV + ED RS++VQLT KG+ 
Sbjct: 63  RRQGQPFRLKPTELYSLLMLSSGAMTNRIDRLEQDGIVIRVRDAEDRRSVMVQLTPKGIQ 122

Query: 130 LINRAVQAHVENERWLLSALSADAVAGLDAHLSTLLLALEK 170
           L +  +    E E+ +LS  +A+ +      L  LL+ LE+
Sbjct: 123 LADTVMPILFEKEKQVLSQFTANELQLSIPMLRKLLMLLEQ 163


>RSc2325 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 165

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/135 (52%), Positives = 92/135 (68%), Gaps = 1/135 (0%)

Query: 17  LEQWRRERPDLDASPMGPIGRLKRCA-VLLEQAVEAGFAQFGLTLWEFDMLAALRRSGSP 75
           +EQW RERPDLD S M  +GRL   A V+  + +   FA++GL   EFD+LA LRR G+P
Sbjct: 8   VEQWNRERPDLDVSSMLLLGRLGEAALVIARERLNPLFAEYGLQPGEFDVLATLRRCGAP 67

Query: 76  YRLTPTELFSTLMVTSGTMTHRLKRLEAQGWIERVANEEDARSMLVQLTRKGLALINRAV 135
           Y LTPT L+   M++SG MT+R+ RL+  GW+ER  N ED R  LV LT  G ALI+ AV
Sbjct: 68  YALTPTALYDAAMMSSGGMTNRIDRLQQAGWVERRPNPEDGRGTLVALTNAGFALIDEAV 127

Query: 136 QAHVENERWLLSALS 150
            AHV+N+R +LS L+
Sbjct: 128 SAHVKNQRAVLSVLT 142