BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0817.p (272 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl88 [KG] COG1349 Transcriptional regulators of sugar metabolis... 215 9e-56 SMb21299 [KG] COG1349 Transcriptional regulators of sugar metabo... 202 5e-52 mll1922 Non COG 193 4e-49 YPO1322 [KG] COG1349 Transcriptional regulators of sugar metabol... 150 4e-36 STM0864 [KG] COG1349 Transcriptional regulators of sugar metabol... 143 5e-34 >AGl88 [KG] COG1349 Transcriptional regulators of sugar metabolism Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 243 Score = 215 bits (547), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 101/225 (44%), Positives = 155/225 (68%) Query: 25 RLSRMQEMIRDQGPTPLARIAEVLGVTVMTVRRDLAAEDAPLICLGGHVLEASPGAGESR 84 RL + ++++ G L A LGV+ +T+RRD+AA+ L CLGG+++ G S Sbjct: 10 RLDALAGLVQETGVLRLRDAASRLGVSEITIRRDIAADGERLSCLGGYIIPVQDGTVSSD 69 Query: 85 YSIDREVDQHAQRKRLACQRAAQRVEEGDSLFIDCGTTMTHLAEALPVDIGLSVICYSLN 144 Y +++E D HA K AC++AA +E D++FIDCGTTM HLA +P + ++VICYSLN Sbjct: 70 YVLEQEKDSHATAKARACRQAAVMIEPYDTVFIDCGTTMPHLARQIPANAHVTVICYSLN 129 Query: 145 IANIVSQRPNTQVILLGGLYHPSSASFASEEGVAYLRRLGVNKAFLSAGGVDPRRGVSCS 204 +A ++ R + ++I+LGG+YHP +ASF+ +EG+ L+R+ +NKAFLSAGGVD + GV+CS Sbjct: 130 VAEELASRNDVRLIMLGGVYHPEAASFSGDEGIEVLKRININKAFLSAGGVDEQHGVTCS 189 Query: 205 NFHEVPIKQAAIASAAECYVVIDQSKLGRFRPAFYSTLEVFSGIV 249 +FHEVPIKQ + + + ++V+D SK + R A Y+++ F+ IV Sbjct: 190 HFHEVPIKQMVMQRSMQKHLVVDSSKFSKVRAARYASIGDFNSIV 234 >SMb21299 [KG] COG1349 Transcriptional regulators of sugar metabolism Sme Sinorhizobium meliloti Length = 263 Score = 202 bits (515), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 97/228 (42%), Positives = 147/228 (64%) Query: 22 RSLRLSRMQEMIRDQGPTPLARIAEVLGVTVMTVRRDLAAEDAPLICLGGHVLEASPGAG 81 R R+ + + + + L A +LGV+ MTVRRD+A LGGH++ A+ G Sbjct: 5 RETRIVTLSDALSARRVVHLKEAAALLGVSEMTVRRDVADNPGLFGYLGGHIVPAAEIEG 64 Query: 82 ESRYSIDREVDQHAQRKRLACQRAAQRVEEGDSLFIDCGTTMTHLAEALPVDIGLSVICY 141 ++ Y + R D HA KR AC AA+ + +++FIDCGTT+ +L E +P D ++ ICY Sbjct: 65 DAPYELARAADIHAGAKRQACIHAARHIRPDETIFIDCGTTLEYLVELIPDDYSITAICY 124 Query: 142 SLNIANIVSQRPNTQVILLGGLYHPSSASFASEEGVAYLRRLGVNKAFLSAGGVDPRRGV 201 S+N A ++++ N ++++LGG+YHPSSASF+ G+A L +LG+N AFLSA G+DP RG Sbjct: 125 SMNTAERLTRKTNLRMVMLGGVYHPSSASFSGAPGIATLDQLGINVAFLSAAGIDPARGA 184 Query: 202 SCSNFHEVPIKQAAIASAAECYVVIDQSKLGRFRPAFYSTLEVFSGIV 249 +C +FHEVP+KQ I+ A E Y+V D SKLG+ + AF++ F ++ Sbjct: 185 TCVHFHEVPVKQKVISLARENYLVADSSKLGKLKAAFFAPPSAFRSLI 232 >mll1922 Non COG Length = 247 Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 147/228 (64%) Query: 22 RSLRLSRMQEMIRDQGPTPLARIAEVLGVTVMTVRRDLAAEDAPLICLGGHVLEASPGAG 81 ++ R +R+ +++ + L+ A +LGV+ MTVRRD+A + LGGH+L A+ Sbjct: 5 KAQRTARLIDLLSQRRVIHLSEAAALLGVSEMTVRRDIATNQGQIAYLGGHILAAAEIEA 64 Query: 82 ESRYSIDREVDQHAQRKRLACQRAAQRVEEGDSLFIDCGTTMTHLAEALPVDIGLSVICY 141 + Y + D HA KR AC A +++ +++FIDCGTT+ HL + +P + ++ ICY Sbjct: 65 DIPYELATAADSHAAAKREACAHAVRKIRPDETIFIDCGTTLIHLVDLIPENYQITAICY 124 Query: 142 SLNIANIVSQRPNTQVILLGGLYHPSSASFASEEGVAYLRRLGVNKAFLSAGGVDPRRGV 201 ++N+A +S++PN +I+LGG+YHP+SASF+ L +G+N AFLSA GVD +RG Sbjct: 125 AMNVAERLSRKPNVTIIMLGGVYHPASASFSGTHDFDILNSVGINVAFLSAAGVDAKRGA 184 Query: 202 SCSNFHEVPIKQAAIASAAECYVVIDQSKLGRFRPAFYSTLEVFSGIV 249 +C +FHE +KQ ++ A E Y+VID SK+G+ + AF+S ++ F ++ Sbjct: 185 TCEHFHEAVVKQKVMSLARENYLVIDSSKIGKLKRAFFSAMDGFDAVI 232 >YPO1322 [KG] COG1349 Transcriptional regulators of sugar metabolism Ype Yersinia pestis Length = 254 Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 133/251 (52%) Query: 19 ERSRSLRLSRMQEMIRDQGPTPLARIAEVLGVTVMTVRRDLAAEDAPLICLGGHVLEASP 78 E R+ R++++ + ++ L A +L V+ MT+RRDL+AE +I LGG+V+ Sbjct: 2 ETRRAERINKLIQALKRSDKIHLKDAANLLRVSEMTIRRDLSAEPTSVILLGGYVVMDPK 61 Query: 79 GAGESRYSIDREVDQHAQRKRLACQRAAQRVEEGDSLFIDCGTTMTHLAEALPVDIGLSV 138 + Y + + + + KR Q AAQ + E D++F DCGTT+ + + + ++ + Sbjct: 62 SNNANNYFVSDQQAKQVEEKRRIGQLAAQLIIENDTVFFDCGTTIPWIIDEIDEELAFTA 121 Query: 139 ICYSLNIANIVSQRPNTQVILLGGLYHPSSASFASEEGVAYLRRLGVNKAFLSAGGVDPR 198 ICYSLN + +PN +VIL GG + P++ F + L + NKAF+SA GV Sbjct: 122 ICYSLNTFLALQDKPNCKVILCGGEFKPNNCIFTPLSQQSELDNICPNKAFISAAGVSIE 181 Query: 199 RGVSCSNFHEVPIKQAAIASAAECYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQDQ 258 G +C NF E+ +K A+A + +V D SK G+ +PA TL F +V P + Sbjct: 182 YGATCFNFDEILLKHRAMAKSQYKILVADHSKFGKIKPASIGTLAQFDALVTDRPPVAEF 241 Query: 259 LDLFSDFPIEV 269 FS +++ Sbjct: 242 YLFFSQHSVKI 252 >STM0864 [KG] COG1349 Transcriptional regulators of sugar metabolism Sty Salmonella typhimurium LT2 Length = 252 Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 131/239 (54%), Gaps = 4/239 (1%) Query: 19 ERSRSLRLSRMQEMIRDQGPTPLARIAEVLGVTVMTVRRDLAAEDAPLICLGGHVLEASP 78 E R R+ ++ + ++ L A +LGV+ MT+RRDL + AP++ LGG+++ Sbjct: 2 ETRRDERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLNHKSAPVVLLGGYIVLEPR 61 Query: 79 GAGESRYSIDREVDQHAQRKRLACQRAAQRVEEGDSLFIDCGTTMTHLAEALPVDIGLSV 138 A S Y + + + + KR A Q AA V+ ++FIDCGTT + EA+ D+ + Sbjct: 62 SA--SHYLLSDQKSRLVEEKRRAAQLAAGLVQAHQTVFIDCGTTTPWIIEAIDNDLPFTA 119 Query: 139 ICYSLNIANIVSQRPNTQVILLGGLYHPSSASFASEEGVAYLRRLGVNKAFLSAGGVDPR 198 +CYSLN + +P+ + IL GG +H S+A F + L + + AF SA GV Sbjct: 120 VCYSLNTFLALQDKPHCRAILSGGEFHASNAIFKPLDFHETLNNICPDIAFYSAAGVHTS 179 Query: 199 RGVSCSNFHEVPIKQAAIASAAECYV-VIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQ 256 +G +C N E+P+K A+ + A+C+V V+D SK G+ RPA L F I+ P++ Sbjct: 180 KGATCFNLEELPVKHWAM-TMAQCHVLVVDHSKFGKVRPARMGELSRFDTIISDRRPDE 237