BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0801.p         (112 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4711 [PR] COG2146 Ferredoxin subunits of nitrite reductase and...    83   2e-16
CC2530 Non COG                                                         60   2e-09
CC0068 Non COG                                                         54   1e-07
RSc1043 [PR] COG2146 Ferredoxin subunits of nitrite reductase an...    53   2e-07
VNG0388C [PR] COG2146 Ferredoxin subunits of nitrite reductase a...    50   2e-06

>PA4711 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Pae Pseudomonas
           aeruginosa
          Length = 115

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 1   MYLCHVTQLPEGGARGFDTEGAGQATIFLLRRGDQVRAWRDICPHHGTPLPWRRDAYLDA 60
           ++LC  + L EG +RGF  +   +  +F +RR  +   + + CPH G PL W+ D +LD 
Sbjct: 10  IHLCPSSHLAEGNSRGFLVD---ERRLFAVRRDGRAYIYLNRCPHRGIPLEWQPDTFLDD 66

Query: 61  SGEHVVCAAHGALFDPLTGVCTLGPCLGDTLTAVPLRIDGDG 102
           S   + CA+HGALF   +G C  GPC G+ L A+P R D +G
Sbjct: 67  SASLIRCASHGALFLIESGECVAGPCAGERLRALPCREDAEG 108


>CC2530 Non COG
          Length = 90

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 39/70 (55%)

Query: 28 FLLRRGDQVRAWRDICPHHGTPLPWRRDAYLDASGEHVVCAAHGALFDPLTGVCTLGPCL 87
          F++RRG+ V  + D CPH G PL    D YL   G+ ++C+ HGA+F    G C  GPC 
Sbjct: 12 FVVRRGEAVFGYVDRCPHAGLPLAQELDRYLTPDGDLILCSWHGAVFKVEDGACVGGPCT 71

Query: 88 GDTLTAVPLR 97
          G  L   P+ 
Sbjct: 72 GARLKPWPVE 81


>CC0068 Non COG
          Length = 122

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 3   LCHVTQLPEGGARGFD-TEGAGQATIFLLRRGDQVRAWRDICPHHGTPLPWRRDAYLDAS 61
           LC + ++   G++GF   EG      F++R+G+ +  + D CPH G PL      YL   
Sbjct: 17  LCGLDEIASPGSKGFRWREGDAMFAGFVVRKGEALVGYVDSCPHAGWPLAGFAGRYLTRD 76

Query: 62  GEHVVCAAHGALFDPLTGVCTLGPC 86
            + ++C+ H ALF    G C  GPC
Sbjct: 77  NDLILCSGHAALFRIEDGGCVAGPC 101


>RSc1043 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Rso Ralstonia
           solanacearum
          Length = 138

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 28  FLLRRGDQVRAWRDICPHHGTPLPWRRDAYLDASGEHVVCAAHGALFDPLTGVCTLGPCL 87
           F++R    V  + + C H    + W+   + ++SG +++CA HGA+++P TG C  GPC 
Sbjct: 40  FVVRYAGGVHGYLNQCAHVPMEMDWQEGQFFESSGLYLMCATHGAIYEPDTGRCVGGPCR 99

Query: 88  GDTLTAVPL-RIDGD 101
           G  LT + +   DGD
Sbjct: 100 GAHLTKLDVAERDGD 114


>VNG0388C [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Hbs Halobacterium sp.
           NRC-1
          Length = 156

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 17/115 (14%)

Query: 3   LCHVTQLPEGGARGFDT----EGAGQATIFLLRRGDQVRAWRDICPHHGTPLPWRRDAYL 58
           +  VT L  G +  F       G  Q  I +      +  W + C H      W  D  L
Sbjct: 22  IASVTDLQAGDSFRFTVRDRDSGDEQEAILVALSDGSITGWLNYCMH------WT-DVTL 74

Query: 59  DASGEHV-----VCAAHGALFDPLTGVCTLGPCLGDTLTAVPLRIDGDGGLHIAD 108
           D+    V     VC  H A FDP +GVCT GPC G TLTAV + +  DG + + D
Sbjct: 75  DSGSGAVRDGELVCRKHAATFDPTSGVCTHGPCEGATLTAVDVTVQ-DGTVSLTD 128