BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0762.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3050 [S] COG5477 Predicted small integral membrane protein Rs...   123   1e-28
msl0703 Non COG                                                        85   3e-17
AGl1911 [S] COG5477 Predicted small integral membrane protein At...    78   5e-15
SMc02515 [S] COG5477 Predicted small integral membrane protein S...    72   4e-13
HP1234 [GER] COG0697 Permeases of the drug/metabolite transporte...    30   0.92 

>RSc3050 [S] COG5477 Predicted small integral membrane protein Rso
          Ralstonia solanacearum
          Length = 93

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/94 (68%), Positives = 73/94 (77%), Gaps = 6/94 (6%)

Query: 5  LSWMSWTPPVAIFFACVVLMLVGMTVWEIRSPTIERKGFLPMRTTRGDRLFIGLLTAAYI 64
           SWM+WTP VAIFF C+ LML GMTVWE+  PT+ERKGFLP+ TTRGDRLFIGLLTAAYI
Sbjct: 2  FSWMAWTPEVAIFFGCIALMLAGMTVWEVARPTVERKGFLPIATTRGDRLFIGLLTAAYI 61

Query: 65 NLAWVGLSDLDQWYAAALGFVA----LVLIMRKG 94
          NLAWVGL+  D    A  GF+A    L+LIM +G
Sbjct: 62 NLAWVGLASEDS--GAWSGFIASMAVLLLIMWRG 93


>msl0703 Non COG
          Length = 97

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 1  MGNALSWMSWTPPVAIFFACVVLMLVGMTVWEIRSPTIE-RKGFLPMRTTRGDRLFIGLL 59
          M   LSWM+WT P A FFA ++L+L GM  WE  SP    R G L   TTRGDRLF+ LL
Sbjct: 3  MNFDLSWMAWTWPTAAFFATILLLLCGMAAWEYASPGGNPRVGILRFETTRGDRLFLSLL 62

Query: 60 TAAYINLAWVGLSDLDQWYAAALGFVALVLIMR 92
           +AYI+LAW+GL   + W+A AL  V  + + R
Sbjct: 63 GSAYIHLAWLGLVGSNLWWALALSVVYAIGVFR 95


>AGl1911 [S] COG5477 Predicted small integral membrane protein Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 99

 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 5  LSWMSWTPPVAIFFACVVLMLVGMTVWEIRSPTIE-RKGFLPMRTTRGDRLFIGLLTAAY 63
           +WM+WT   A FFA + ++LVGM VWE  SP    R G L   TTRGDRLFI LL +A+
Sbjct: 9  FTWMAWTWQTAAFFAAIAVLLVGMWVWERLSPGGNPRFGLLRFETTRGDRLFISLLGSAF 68

Query: 64 INLAWVGLSDLDQWYAAALGFVALVLIMR 92
          I+LAW+GL   + W+A AL  V  + + R
Sbjct: 69 IHLAWLGLVGPNLWWALALSLVYAIGVFR 97


>SMc02515 [S] COG5477 Predicted small integral membrane protein Sme
           Sinorhizobium meliloti
          Length = 139

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 7   WMSWTPPVAIFFACVVLMLVGMTVWEIRSPTIE-RKGFLPMRTTRGDRLFIGLLTAAYIN 65
           WM+W+ P A+FF  +  +L  M VWE   P    R G L   TTRGDRLF+ LL +A+I+
Sbjct: 51  WMAWSFPTAMFFLTIFALLSLMAVWEYARPGGNPRVGILRFETTRGDRLFVSLLGSAFIH 110

Query: 66  LAWVGLSDLDQWYAAALGFVALVLIMR 92
           LAW+GL   + W+A AL  +  V + R
Sbjct: 111 LAWLGLVGANLWWAVALSVIYAVGVFR 137


>HP1234 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Hpy Helicobacter pylori 26695
          Length = 298

 Score = 30.4 bits (67), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 8/46 (17%)

Query: 33  IRSPTIERKGFLPMRTTRGDRLFIGLLTAAYINLAWVGLSDLDQWY 78
           I  P++E  G  P+       +F+G+L+  +++LA++ L DL ++Y
Sbjct: 139 ISDPSVENVG--PVE------IFMGILSGIFVSLAYITLRDLREYY 176