BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0756.p (252 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3044 [KG] COG1349 Transcriptional regulators of sugar metabol... 307 2e-83 PA3583 [KG] COG1349 Transcriptional regulators of sugar metaboli... 260 2e-69 YPO0120 [KG] COG1349 Transcriptional regulators of sugar metabol... 252 7e-67 BMEI1750 [KG] COG1349 Transcriptional regulators of sugar metabo... 243 4e-64 VCA0940 [KG] COG1349 Transcriptional regulators of sugar metabol... 242 5e-64 >RSc3044 [KG] COG1349 Transcriptional regulators of sugar metabolism Rso Ralstonia solanacearum Length = 261 Score = 307 bits (786), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 146/241 (60%), Positives = 191/241 (79%) Query: 1 MLNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSS 60 ++ PR + +LE VR+HG +V+ LA+ L VT QT+RRD++ + D LLARYHGGVGL SS Sbjct: 7 LMLPRHRQILEYVRQHGDATVDALARVLGVTAQTIRRDIRQLEDERLLARYHGGVGLPSS 66 Query: 61 TENIAYPQRQVMHAEAKRRIGQTVAARVPDGCSLILNLGTTTEEVARALQQHKHLHVVTN 120 ENI Y QRQV+H +AKRRI + VA + G SLI+N+GTTTEE+++AL K L V+TN Sbjct: 67 VENIDYDQRQVLHIDAKRRIAEVVARHIEPGRSLIINIGTTTEEISKALVGRKGLRVITN 126 Query: 121 NLNVATSLASNPELEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDGVL 180 NLNVA+ L+ +P+ EVI+AGG+VR RDRGIVGEATIDF++QF+VD+GIIG+SSI+ DG L Sbjct: 127 NLNVASILSGSPDAEVIVAGGLVRNRDRGIVGEATIDFMKQFRVDVGIIGVSSIDEDGTL 186 Query: 181 RDFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELAKL 240 D+D REV+VAQTIIEQSR+VWL AD SKFGR+A+V++ H+SQID FTD P P + ++ Sbjct: 187 LDYDYREVRVAQTIIEQSREVWLAADHSKFGRRAVVRLGHISQIDKFFTDLPVPEPMVEV 246 Query: 241 L 241 Sbjct: 247 F 247 >PA3583 [KG] COG1349 Transcriptional regulators of sugar metabolism Pae Pseudomonas aeruginosa Length = 251 Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 122/247 (49%), Positives = 180/247 (72%), Gaps = 1/247 (0%) Query: 2 LNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSST 61 L PRQQ+++E VR+ G +S+EE+AQ VT QT+RRD+ + + LL RYHGG SS Sbjct: 3 LPPRQQSIIEEVRERGYLSIEEMAQMFAVTPQTIRRDINQLAEQGLLRRYHGGAAYDSSI 62 Query: 62 ENIAYPQRQVMHAEAKRRIGQTVAARVPDGCSLILNLGTTTEEVARALQQHKHLHVVTNN 121 EN AY R + K+RI + VA+ VPD SL +N+GTTTE +ARAL H++L ++TNN Sbjct: 63 ENTAYTMRADQMRDEKQRIAEAVASLVPDNASLFINIGTTTEAIARALLNHRNLKIITNN 122 Query: 122 LNVATSLASNPELEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDGVLR 181 L+VA +L++ + EV++AGG VR+ D GIVG+A +DFI+QF+VD ++GIS I+ DG L Sbjct: 123 LHVAATLSAKEDFEVLVAGGTVRS-DGGIVGQAAVDFIQQFRVDFALVGISGIDEDGSLL 181 Query: 182 DFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELAKLL 241 DFD +EV+V+Q II+ +RQV+L AD+SKFGR A+V++ +S ++ + +D+PPP +A+L+ Sbjct: 182 DFDYQEVRVSQAIIDNARQVFLAADSSKFGRNAVVRLGPISLVNRVISDSPPPAAIARLM 241 Query: 242 AETDVEV 248 A+ V + Sbjct: 242 AQHKVHL 248 >YPO0120 [KG] COG1349 Transcriptional regulators of sugar metabolism Ype Yersinia pestis Length = 252 Score = 252 bits (643), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 122/244 (50%), Positives = 168/244 (68%) Query: 5 RQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSSTENI 64 R ++E VR G +S EEL + V+ QT+RRD+ + D + + R+HGG L SS+ N Sbjct: 6 RHDAIIELVRLQGYVSTEELVEHFAVSPQTIRRDLNELADQNKIHRHHGGAALPSSSVNA 65 Query: 65 AYPQRQVMHAEAKRRIGQTVAARVPDGCSLILNLGTTTEEVARALQQHKHLHVVTNNLNV 124 AY R+VM +E K RI Q VA+++PDG +L +++GTT E VA AL HK L VVTNNLNV Sbjct: 66 AYNDRKVMWSEEKARIAQRVASQIPDGATLFIDIGTTPEAVAHALMNHKGLRVVTNNLNV 125 Query: 125 ATSLASNPELEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDGVLRDFD 184 AT L + + +I+AGG VR RD GI+GEAT+DFI QF++D GI+GIS I+MDG L +FD Sbjct: 126 ATLLTAKEDFRLILAGGEVRTRDGGIIGEATLDFISQFRLDYGILGISGIDMDGSLLEFD 185 Query: 185 AREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELAKLLAET 244 EV+ + IIE SR V LV D SKFGR A+V + +++ ID LFTD PP + K++ + Sbjct: 186 YHEVRTKRAIIENSRCVMLVTDHSKFGRNAMVNLGNMNLIDYLFTDQQPPASVMKIIEQH 245 Query: 245 DVEV 248 +V++ Sbjct: 246 EVQL 249 >BMEI1750 [KG] COG1349 Transcriptional regulators of sugar metabolism Bme Brucella melitensis Length = 286 Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 126/248 (50%), Positives = 162/248 (65%) Query: 2 LNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSST 61 L PR ++E R+ G + V++LA +VT QTVR+D+ + A LL R HGG S Sbjct: 26 LTPRHHAIVELARRKGQVLVDDLAVAFDVTPQTVRKDLNDLCRARLLRRIHGGALYPSGV 85 Query: 62 ENIAYPQRQVMHAEAKRRIGQTVAARVPDGCSLILNLGTTTEEVARALQQHKHLHVVTNN 121 EN+ Y R+ + A K IG+ AA +PDG SL +N+GTTTE V+ AL H HL V+TNN Sbjct: 86 ENMEYEARRRIAAHEKESIGRATAAIIPDGASLFINIGTTTEAVSHALVDHNHLMVITNN 145 Query: 122 LNVATSLASNPELEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDGVLR 181 +NVA +L P +EV+IAGGVVRA D GIVGEA +DFIRQFKVD IIG S+I+ DG L Sbjct: 146 INVANTLRVYPSIEVVIAGGVVRASDGGIVGEAAVDFIRQFKVDFAIIGTSAIDEDGALL 205 Query: 182 DFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELAKLL 241 DFD REVKVAQ II +R V LV D++K R A V++ HLSQ++ TD +L L Sbjct: 206 DFDFREVKVAQAIIANARHVILVTDSTKLERTAPVRIGHLSQVNTFITDRCTSLQLQDLC 265 Query: 242 AETDVEVV 249 E VE++ Sbjct: 266 REHGVELI 273 >VCA0940 [KG] COG1349 Transcriptional regulators of sugar metabolism Vch Vibrio cholerae Length = 253 Score = 242 bits (618), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 114/245 (46%), Positives = 163/245 (66%), Gaps = 1/245 (0%) Query: 5 RQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSSTENI 64 R Q ++E V+ G +S EEL ++ +V+ QT+RRD+ + +A+ L R HGG + +S+EN Sbjct: 6 RHQEIIELVQAQGFVSTEELVERFDVSPQTIRRDLNELAEANKLRRNHGGATIATSSENS 65 Query: 65 AYPQRQVMHAEAKRRIGQTVAARVPDGCSLILNLGTTTEEVARALQ-QHKHLHVVTNNLN 123 +Y RQV + K ++ + +PDG +L +++GTT E +ARAL H L VVTNNLN Sbjct: 66 SYHTRQVSYQNEKEKVAMALVQHIPDGATLFIDIGTTPEAIARALMVNHHQLRVVTNNLN 125 Query: 124 VATSLASNPELEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDGVLRDF 183 VAT L S P+ +I+AGG VR +D G+ GEAT+DFI QF++D GI+GIS I+ DG L DF Sbjct: 126 VATMLMSKPDFSIILAGGEVRNKDGGVTGEATLDFISQFRLDFGILGISGIDYDGSLLDF 185 Query: 184 DAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELAKLLAE 243 D EV+V + IIE SR V+L D SKFGR A+VK+ L+ +D++ TD PP E+ E Sbjct: 186 DYHEVRVKRAIIENSRSVFLAVDHSKFGRNAMVKLGTLADVDLVITDQTPPKEIEAFAKE 245 Query: 244 TDVEV 248 +V + Sbjct: 246 NEVTI 250