BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0750.p (353 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport... 454 e-127 mlr5222 Non COG 417 e-116 APE1304 [E] COG4177 ABC-type branched-chain amino acid transport... 139 7e-33 AF0225 [E] COG4177 ABC-type branched-chain amino acid transport ... 101 2e-21 RSc2439 [E] COG4177 ABC-type branched-chain amino acid transport... 100 5e-21 >AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 364 Score = 454 bits (1169), Expect = e-127, Method: Compositional matrix adjust. Identities = 247/335 (73%), Positives = 288/335 (85%) Query: 9 AASAAPKAHPAAQLRRAWPWLLLLVAYGVLPWAASNYVIDALLIPFLALSLAAVGLNLLT 68 +A AA + P + RRA ++L +AY V+P+ ++Y+ +A+L+PFLALSLA VGLNLLT Sbjct: 2 SAIAADLSLPCSLPRRAGTVVVLAIAYLVVPFVGTSYLFEAILLPFLALSLAGVGLNLLT 61 Query: 69 GYAGQLSLGSSAFMAVGAFAAYNINLRVGGLPLLLSIALAGLAATAVGLVFGLPSLRLRG 128 GYAGQ+SLGS+AFMAVGAFAAYN +LRV GLPL +SI LAGL+A +G+VFGLPSLRLRG Sbjct: 62 GYAGQVSLGSAAFMAVGAFAAYNFDLRVDGLPLTVSIVLAGLSAAIIGIVFGLPSLRLRG 121 Query: 129 FYLAVSTLAAQFFVQWVLVKFSWFSNDNPSGVIDAPALVVGGISFDTPAGRYLFALGIVT 188 FYLAVSTLAAQFFVQW L KFSW SN++ SGVIDAPAL + GISF+ P GRYLFAL VT Sbjct: 122 FYLAVSTLAAQFFVQWALTKFSWLSNESASGVIDAPALSLAGISFEGPVGRYLFALTTVT 181 Query: 189 VLTLLSWRLVLTQTGHHFIAVRDNEQAARVIGIPVLRTKLLAFAISSFIIGVAGVLWGFV 248 LT L++RLV +QTG +FIAVRDNE AAR+IG+PVLRTKLLAFAISSFIIGVAGV+W F Sbjct: 182 ALTFLAYRLVSSQTGRNFIAVRDNETAARIIGVPVLRTKLLAFAISSFIIGVAGVIWAFA 241 Query: 249 YLRTVEPAGFNLDRSLQILFIVIIGGLATIRGAFLGAALIVVFPLLLSRLGSLLLGQWFD 308 YLRTVEPAGFNLDRS QILFIVIIGGLA+IRGAF GAALIVVFPL+LSRLGSLLLG FD Sbjct: 242 YLRTVEPAGFNLDRSFQILFIVIIGGLASIRGAFFGAALIVVFPLVLSRLGSLLLGDVFD 301 Query: 309 SGVLEMSQRIVLGALIIFFLIVEPQGLAALWERAR 343 SGVL+M+QRIV+GALII FLI+EP GL +LW+R + Sbjct: 302 SGVLDMTQRIVIGALIILFLILEPDGLVSLWDRLK 336 >mlr5222 Non COG Length = 346 Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust. Identities = 239/320 (74%), Positives = 273/320 (85%) Query: 27 PWLLLLVAYGVLPWAASNYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSSAFMAVGA 86 P LLL AYG++P S+Y+ +A+L+PFLAL LA VGLN+LTGYAGQ+SLGS+AFMA GA Sbjct: 20 PVLLLAFAYGIVPLIGSSYLFEAILLPFLALGLAGVGLNILTGYAGQVSLGSAAFMAAGA 79 Query: 87 FAAYNINLRVGGLPLLLSIALAGLAATAVGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVL 146 FAAYN NLRV GLPL+ SI LAG+ A A+G+VFGLPSLRL+GFYLAVSTLAAQFFVQW L Sbjct: 80 FAAYNFNLRVEGLPLIGSIVLAGIVAAAIGIVFGLPSLRLKGFYLAVSTLAAQFFVQWAL 139 Query: 147 VKFSWFSNDNPSGVIDAPALVVGGISFDTPAGRYLFALGIVTVLTLLSWRLVLTQTGHHF 206 KFSWFSN++ SGVIDAP L +GG++ D GRYLFAL V +LT L+ RLV +QTG +F Sbjct: 140 TKFSWFSNNSASGVIDAPRLSIGGLALDGAVGRYLFALTTVALLTFLAHRLVTSQTGRNF 199 Query: 207 IAVRDNEQAARVIGIPVLRTKLLAFAISSFIIGVAGVLWGFVYLRTVEPAGFNLDRSLQI 266 IA+RDNE AAR+IGIPVL+TKLLAFAISSFIIGVAGV+W F YLRTVEPAGF+LDRS QI Sbjct: 200 IAIRDNETAARIIGIPVLKTKLLAFAISSFIIGVAGVIWAFAYLRTVEPAGFDLDRSFQI 259 Query: 267 LFIVIIGGLATIRGAFLGAALIVVFPLLLSRLGSLLLGQWFDSGVLEMSQRIVLGALIIF 326 LFI+IIGGLA+IRGAF GAALIVVFPL LSRLG LLG FDSGVL+MSQRIVLGALII Sbjct: 260 LFIIIIGGLASIRGAFFGAALIVVFPLGLSRLGGFLLGDVFDSGVLDMSQRIVLGALIIL 319 Query: 327 FLIVEPQGLAALWERARRSL 346 FLI+EP GL ALW+R RR L Sbjct: 320 FLILEPDGLVALWDRVRRRL 339 >APE1304 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ape Aeropyrum pernix Length = 349 Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 108/310 (34%), Positives = 169/310 (54%), Gaps = 14/310 (4%) Query: 39 PWAASNYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSSAFMAVGAFAAYNINLRVGG 98 P+ Y ++ LL+ + +AA+GLN+ G AGQ+SL +A M +GA+ N L +G Sbjct: 41 PFVIGKYYLN-LLVVMMIFWIAAIGLNITLGLAGQISLAHAALMGIGAYTVANAALHLG- 98 Query: 99 LPLLLSIALAGLAATAVGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSNDNPS 158 + + + +AGLAA +G++ LPS RL+ +YLA+++LAAQ +++V +S +P Sbjct: 99 VNSVAILPIAGLAAALLGIILSLPSFRLKEYYLAMASLAAQLILEYV------YSRIDPD 152 Query: 159 GVIDAP--ALVVGGISFDTPAGRYLFALGIVTVLTLLSWRLVLTQTGHHFIAVRDNEQAA 216 P + GIS P Y F L I V+ L + + + G AVRDN+ A+ Sbjct: 153 QYTPVPPETKTLLGISLTEPTALYYFILAITVVMALAAANIGRSSLGRAMKAVRDNDVAS 212 Query: 217 RVIGIPVLRTKLLAFAISSFIIGVAGVLWGFVYLRTVEPAGFNLDRSLQILFIVIIGGLA 276 IGI V K AFAI F GVAG L+ +Y + GF L S+++L +V+IGG Sbjct: 213 EAIGINVQLVKATAFAIGGFYAGVAGGLYA-IYSSGIGWEGFTLVNSIELLGMVLIGGPG 271 Query: 277 TIR-GAFLGAALIVV-FPLLLSRLGSLLLGQWFDSGVLEMSQRIVLGALIIFFLIVEPQG 334 + G+ LG ++ + ++ S + LL G S + ++ IVLG LI+ F+I EP+G Sbjct: 272 RVVWGSLLGVLVMRTGWTMMESTITPLLAGIGL-SIIASSAKYIVLGFLIVAFIIAEPEG 330 Query: 335 LAALWERARR 344 L A+ R + Sbjct: 331 LIAVLRRVKE 340 >AF0225 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Afu Archaeoglobus fulgidus Length = 338 Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 98/319 (30%), Positives = 169/319 (52%), Gaps = 22/319 (6%) Query: 21 QLRRAWPWLLLLVAYGVLPWAASNYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSSA 80 ++ RA+ L L+VA V+P+ + L + ++ ++ + +L+ GY GQ++LG + Sbjct: 28 RITRAFNALALIVA-AVMPFILPEAYLYILGLAYI-FAIMVISWDLMVGYTGQVNLGHTT 85 Query: 81 FMAVGAFAA--YNINLRVG-GLPLLLSIALAGLAATAVGLVFGLPSLRLRGFYLA-VSTL 136 F+ +GA+ A +R G L L+I G+ A VGL G+ +LRLRG+Y + V+ + Sbjct: 86 FVGLGAYVAAILQTPIRAGLSLHPALAIITGGVVAAGVGLSIGIITLRLRGYYFSLVTAI 145 Query: 137 AAQFFVQWVLVKFSWFSNDNPSGVIDAPALVVGGISFDTPAGRYLFALGIVTVLTLLSWR 196 F+Q V + F + + T +Y F+L ++ V ++ + Sbjct: 146 LPLVFMQTVFIWRELFGGEE--------GFAIENTMLTTTVEKYYFSLAVLVVSLVVMKK 197 Query: 197 LVLTQTGHHFIAVRDNEQAARVIGIPVLRTKLLAFAISSFIIGVAGVLWGFVYLRTVEPA 256 +V ++ G F+A+RD+E+ A +GI + K+LAFA+SSF G+AG + Y TV P Sbjct: 198 VVDSRIGLRFMALRDSEELAESLGINATKYKVLAFALSSFFAGIAGAMV-VNYRVTVSPE 256 Query: 257 GFNLDRSLQILFIVIIGGLATIRGAFLGAALIVVFPLLLSRLGSLLLGQWFDSGVLEMSQ 316 + + L I+ ++GGL T+ G GA IV++ L++ + LGQ + L ++ Sbjct: 257 LYGVPLMLLIILSAVLGGLGTLYGPLAGA--IVIY---LAK--NWWLGQIIRTLSLPIND 309 Query: 317 RIVLGALIIFFLIVEPQGL 335 IVL AL+I I+ P+GL Sbjct: 310 DIVLYALLIAVGILMPEGL 328 >RSc2439 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 378 Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 106/339 (31%), Positives = 162/339 (47%), Gaps = 45/339 (13%) Query: 42 ASNYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSSAFMAVGAFA------------- 88 NY + L L + LA +GLN++ G+AG L LG AF AVGA+ Sbjct: 36 GGNYWVRVLDFALLYIMLA-LGLNIVVGFAGLLDLGYIAFYAVGAYMMALLGSPHLTNQF 94 Query: 89 AYNINLRVGGLPLLL--SIALAGLAATAVGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVL 146 + L GL LL+ I L A G++ G P+L+LRG YLA+ TL ++ + Sbjct: 95 EWIHQLFPNGLHLLIWWVIPLGAGLAALFGILLGAPTLKLRGDYLAIVTLGFGEIIRIFM 154 Query: 147 VKFSWFSN--DNPSGV-IDAPALVVG----------GISFDTPAGRY-----LFALGIVT 188 N + P GV + P + G GI F+ P Y L A+GI+T Sbjct: 155 NNLDRPVNITNGPKGVNLIEPVKLFGFDFSKRHDIFGIHFE-PVHMYYYLFVLLAMGIIT 213 Query: 189 VLTLLSWRLVLTQTGHHFIAVRDNEQAARVIGIPVLRTKLLAFAISSFIIGVAGVLWGFV 248 V RL ++ G ++A+R++E AA+ +GI KLLAFA+ + GV+G ++ Sbjct: 214 V----CLRLQNSRIGRAWVAIREDEIAAKAMGINTRNIKLLAFAMGASFGGVSGAMFA-S 268 Query: 249 YLRTVEPAGFNLDRSLQILFIVIIGGLATIRGAFLGAALIVVFPLLLSRLGSLLLGQWFD 308 + V P F L S+ IL IV++GG+ I G LG L+V F LL L + + F Sbjct: 269 FQGFVSPESFVLWESIYILAIVVLGGMGHIPGVILGGILLVGFQELLRALAEPIQNKLFG 328 Query: 309 SGVLEMS--QRIVLGALIIFFLIVEPQGLAALWERARRS 345 ++E ++++ G ++ ++ P G LW R+ Sbjct: 329 HVIVEAEVLRQLLFGLAMVGVMLYRPAG---LWPSPRKE 364