BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0746.p         (186 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2357 [R] COG0431 Predicted flavoprotein Pae Pseudomonas aerugi...   185   6e-47
SMb20573 [R] COG0431 Predicted flavoprotein Sme Sinorhizobium me...   142   5e-34
AGpA786 [R] COG0431 Predicted flavoprotein Atu Agrobacterium tum...   132   4e-31
mlr5227 [R] COG0431 Predicted flavoprotein Mlo Mesorhizobium loti     128   7e-30
Cgl1606 [R] COG0431 Predicted flavoprotein Cgl Corynebacterium g...    82   6e-16

>PA2357 [R] COG0431 Predicted flavoprotein Pae Pseudomonas aeruginosa
          Length = 186

 Score =  185 bits (469), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 93/176 (52%), Positives = 121/176 (68%)

Query: 1   MSRPLQVVVVAGSGRRPSRTLGLLNAIAAQLGQHLSIQTEVVALSDLTGQLLGATELDQL 60
           M+ P +VV V+G   RPSRTL L  A+ A+LGQ L I + V+ L+D+   L      +Q 
Sbjct: 1   MTSPFKVVAVSGGTYRPSRTLVLTQALIAELGQSLPIDSRVIELTDIAAPLGATLARNQA 60

Query: 61  PAPVRQNIAAIEAADLLLAGSPVYRGSYSGLFKHLFDLVPQESLFGKPVLLAATGGSDRH 120
           PA ++  +  IE+ADLLL  SPVYRGSY GL KHLFDL+   +L   PVLLAATGG++RH
Sbjct: 61  PAELQAVLDEIESADLLLVASPVYRGSYPGLLKHLFDLIDLNALIDTPVLLAATGGTERH 120

Query: 121 ALTIDHQLRPLFAFFQTLTLPLGVYANAQEFDNETIISTALQERIALTVQLALPVL 176
           AL +DHQLRPLF+FFQ +TLP+GVYA+  +FDN  I+S  L+ RI L  + A P+ 
Sbjct: 121 ALVLDHQLRPLFSFFQAITLPIGVYASEADFDNYRIVSEPLKARIRLAAERAAPLF 176


>SMb20573 [R] COG0431 Predicted flavoprotein Sme Sinorhizobium meliloti
          Length = 185

 Score =  142 bits (357), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 102/164 (62%)

Query: 6   QVVVVAGSGRRPSRTLGLLNAIAAQLGQHLSIQTEVVALSDLTGQLLGATELDQLPAPVR 65
           +VV ++G+  RPSRT   ++ I  +L        +   + D    LL A  LD+L    R
Sbjct: 5   RVVGISGNITRPSRTRAFVDHIVHRLAVDAGASAQTFDIEDFGASLLPARRLDELAPEAR 64

Query: 66  QNIAAIEAADLLLAGSPVYRGSYSGLFKHLFDLVPQESLFGKPVLLAATGGSDRHALTID 125
             +  I AAD+L+  SP ++GSY+GLFKH+FDL+   SL GKPV+LAATGG +RH+L ++
Sbjct: 65  YVVGQILAADILVVASPTFKGSYTGLFKHVFDLLDPSSLRGKPVILAATGGGERHSLMVE 124

Query: 126 HQLRPLFAFFQTLTLPLGVYANAQEFDNETIISTALQERIALTV 169
           HQLRPLF FF+ L +P  +YA+ ++F +  + S A+  R+   V
Sbjct: 125 HQLRPLFGFFEALAMPTAIYASDKDFADGALASEAIHARVGRAV 168


>AGpA786 [R] COG0431 Predicted flavoprotein Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 200

 Score =  132 bits (332), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 111/185 (60%)

Query: 1   MSRPLQVVVVAGSGRRPSRTLGLLNAIAAQLGQHLSIQTEVVALSDLTGQLLGATELDQL 60
           M R + V+ ++GS ++PSRT  +++ I A + +  S+  + + L+     L  A   DQL
Sbjct: 1   MRRTMNVLGISGSVKQPSRTARVVSDILASIERRASVSVDTIDLAVAAPILFRALRADQL 60

Query: 61  PAPVRQNIAAIEAADLLLAGSPVYRGSYSGLFKHLFDLVPQESLFGKPVLLAATGGSDRH 120
               R+ I A+E AD+L+ GSPVYR SY+G  KHLFDLV   +L GK V+LAATGG+  H
Sbjct: 61  DEAGRRIIDAVEIADVLVVGSPVYRASYTGALKHLFDLVDFRALQGKRVVLAATGGTPLH 120

Query: 121 ALTIDHQLRPLFAFFQTLTLPLGVYANAQEFDNETIISTALQERIALTVQLALPVLQALA 180
            L ++HQ RPLF FF  +T+P  VYA   +F   T+ +  ++ RI   V   + +L A  
Sbjct: 121 GLMLEHQFRPLFGFFGAVTVPTTVYAVEADFTGYTLSNPEVEARIERAVAELIDLLPARD 180

Query: 181 VARSN 185
           VA ++
Sbjct: 181 VAAAD 185


>mlr5227 [R] COG0431 Predicted flavoprotein Mlo Mesorhizobium loti
          Length = 186

 Score =  128 bits (322), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 100/173 (57%), Gaps = 7/173 (4%)

Query: 1   MSRPLQVVVVAGSGRRPSRTLGLLNAIAAQLGQHLSIQTEVVALSDLT---GQLLGATEL 57
           MS P  VV  +G+  RPS+T   +  +   +     +      + D+    G    A +L
Sbjct: 1   MSNP-TVVGFSGNITRPSKTRAFVELVTRDIAARHGLSAVTYDIEDVGPSLGTARWARDL 59

Query: 58  DQLPAPVRQNIAAIEAADLLLAGSPVYRGSYSGLFKHLFDLVPQESLFGKPVLLAATGGS 117
           D    P+   +A I AAD+L+ GSP Y+GSY+GLFKH FDL+   +L GKP++L ATGG 
Sbjct: 60  DSQAQPI---LAQILAADVLVVGSPTYKGSYTGLFKHFFDLIDPAALRGKPIVLTATGGG 116

Query: 118 DRHALTIDHQLRPLFAFFQTLTLPLGVYANAQEFDNETIISTALQERIALTVQ 170
           +RHAL ++HQLRPLF FF+   LP  VYA  ++F +  + S A+ +R A  V 
Sbjct: 117 ERHALIVEHQLRPLFGFFEAFALPTAVYATDKDFTDGVLRSEAILKRAAQAVD 169


>Cgl1606 [R] COG0431 Predicted flavoprotein Cgl Corynebacterium glutamicum
          Length = 165

 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 57/81 (70%)

Query: 74  ADLLLAGSPVYRGSYSGLFKHLFDLVPQESLFGKPVLLAATGGSDRHALTIDHQLRPLFA 133
           +D L+A +PV+  SYSG+FK  FD++  +++ G P ++AA+ G+ RH+L +DH +RPLF 
Sbjct: 16  SDGLIAVTPVFTASYSGIFKMFFDVLDPKTIVGLPTIIAASAGTARHSLVLDHAIRPLFT 75

Query: 134 FFQTLTLPLGVYANAQEFDNE 154
           + + + +P GV+A  ++F  E
Sbjct: 76  YLRAVVVPTGVFAATEDFGTE 96