BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0729.p         (70 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMB1950 [J] COG0828 Ribosomal protein S21 Nme Neisseria meningit...   112   2e-25
NMA0502 [J] COG0828 Ribosomal protein S21 NmA Neisseria meningit...   112   2e-25
RSc0008 [J] COG0828 Ribosomal protein S21 Rso Ralstonia solanace...   102   2e-22
rpsU [J] COG0828 Ribosomal protein S21 Eco Escherichia coli K12        85   5e-17
ZrpsU [J] COG0828 Ribosomal protein S21 EcZ Escherichia coli O15...    85   5e-17

>NMB1950 [J] COG0828 Ribosomal protein S21 Nme Neisseria meningitidis MC58
          Length = 70

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 61/70 (87%)

Query: 1  MTTIRVKENEPFEVAMRRFKRTIEKTGLLTELRAREFYEKPTAERKRKLAAAVKRHYKRI 60
          M  IRVKENEPFEVAMRRFKR +EKTGLLTELRARE YEKPT ERKRK AAAVKR  KR+
Sbjct: 1  MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTERKRKKAAAVKRLQKRL 60

Query: 61 RSQQLPKKLY 70
          RSQQLP K+Y
Sbjct: 61 RSQQLPPKMY 70


>NMA0502 [J] COG0828 Ribosomal protein S21 NmA Neisseria meningitidis
          Z2491
          Length = 70

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 61/70 (87%)

Query: 1  MTTIRVKENEPFEVAMRRFKRTIEKTGLLTELRAREFYEKPTAERKRKLAAAVKRHYKRI 60
          M  IRVKENEPFEVAMRRFKR +EKTGLLTELRARE YEKPT ERKRK AAAVKR  KR+
Sbjct: 1  MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTERKRKKAAAVKRLQKRL 60

Query: 61 RSQQLPKKLY 70
          RSQQLP K+Y
Sbjct: 61 RSQQLPPKMY 70


>RSc0008 [J] COG0828 Ribosomal protein S21 Rso Ralstonia solanacearum
          Length = 70

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 59/70 (84%)

Query: 1  MTTIRVKENEPFEVAMRRFKRTIEKTGLLTELRAREFYEKPTAERKRKLAAAVKRHYKRI 60
          MTTIR+KENEP EVA+RRF+R IE+TGL+ ELRAR  YEKPT ERKRK AAAV R  KR+
Sbjct: 1  MTTIRLKENEPVEVALRRFRREIERTGLIKELRARTAYEKPTTERKRKKAAAVSRTRKRL 60

Query: 61 RSQQLPKKLY 70
          RSQ LPKKLY
Sbjct: 61 RSQMLPKKLY 70


>rpsU [J] COG0828 Ribosomal protein S21 Eco Escherichia coli K12
          Length = 71

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 50/60 (83%)

Query: 1  MTTIRVKENEPFEVAMRRFKRTIEKTGLLTELRAREFYEKPTAERKRKLAAAVKRHYKRI 60
          M  I+V+ENEPF+VA+RRFKR+ EK G+L E+R REFYEKPT ERKR  A+AVKRH K++
Sbjct: 1  MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKL 60


>ZrpsU [J] COG0828 Ribosomal protein S21 EcZ Escherichia coli O157:H7
          EDL933
          Length = 71

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 50/60 (83%)

Query: 1  MTTIRVKENEPFEVAMRRFKRTIEKTGLLTELRAREFYEKPTAERKRKLAAAVKRHYKRI 60
          M  I+V+ENEPF+VA+RRFKR+ EK G+L E+R REFYEKPT ERKR  A+AVKRH K++
Sbjct: 1  MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKL 60