BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0728.p (402 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2218 [R] COG2081 Predicted flavoproteins Rso Ralstonia solana... 506 e-143 SMc00763 [R] COG2081 Predicted flavoproteins Sme Sinorhizobium m... 439 e-123 AGc1070 [R] COG2081 Predicted flavoproteins Atu Agrobacterium tu... 429 e-120 CC1477 Non COG 411 e-114 VC0080 [R] COG2081 Predicted flavoproteins Vch Vibrio cholerae 405 e-112 >RSc2218 [R] COG2081 Predicted flavoproteins Rso Ralstonia solanacearum Length = 412 Score = 506 bits (1304), Expect = e-143, Method: Compositional matrix adjust. Identities = 261/395 (66%), Positives = 299/395 (75%), Gaps = 12/395 (3%) Query: 10 DVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNVGAGPQHYLS 69 DVA+IGAGAAGMMCAAVAGQRG RVVLIDHA KLAEKIRISGGGRCNFTN AGP +YLS Sbjct: 5 DVAVIGAGAAGMMCAAVAGQRGARVVLIDHATKLAEKIRISGGGRCNFTNRNAGPANYLS 64 Query: 70 QNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLKAECDVGNVS 129 NPHFCRSAL+RYTPQDFIGLV +RI +HEKHKGQLFCDDSAEDII ML+AECD GNV Sbjct: 65 NNPHFCRSALARYTPQDFIGLVSGYRIPYHEKHKGQLFCDDSAEDIIRMLEAECDKGNVL 124 Query: 130 WRMPCSVQAVGKSGEQFRIATSAGEIQAASLVIATGGLSIPKIGATDFAYRIARQFELKL 189 WR C++ VGK+G+ +R+ATSAGEI A LVIATGGLSIPKIGATDF YRIARQF LK+ Sbjct: 125 WRAGCAIAEVGKAGDAYRLATSAGEIVADKLVIATGGLSIPKIGATDFGYRIARQFGLKI 184 Query: 190 IEPRPGLVPLTFDGKAWQSLTELAGIALEVEVETGV---------KKERG---YFLEDLL 237 +E P LVPLTF + W L+G+++EV+V + RG F EDLL Sbjct: 185 VETHPALVPLTFQSEHWAPFAALSGVSMEVDVTVAPAAAAGKAGHRGNRGGATTFREDLL 244 Query: 238 FTHRGLSGPAILQISSYWKPGAPLTLNLLPQLDVAETLIEGKGSIKKNLGNILAQWLPNR 297 THRGLSGPA+LQISS+W G PL+++LLP D A+ L K +K LG +LAQ LP R Sbjct: 245 LTHRGLSGPAVLQISSFWSAGQPLSIDLLPDTDAAQWLCGEKAGSRKQLGTVLAQRLPER 304 Query: 298 LAEGWLKIHGFDAGARIADMPDKSLKKLGDSLNRWVIVPSGSEGYRKAEVTLGGVDTREL 357 +A+ W HG A IA++ DK L+ LG +LNRW + PSGSEGYRKAEVT GGVDTR L Sbjct: 305 VAQAWCATHGASPHAPIAELSDKVLRTLGCALNRWALTPSGSEGYRKAEVTRGGVDTRAL 364 Query: 358 SQQSMMVNKVPGLHFIGEAMDVTGWLGGYNFQWAW 392 S +M PGLHFIGE +DVTGWLGGYNFQWAW Sbjct: 365 SSATMEAQAAPGLHFIGEVVDVTGWLGGYNFQWAW 399 >SMc00763 [R] COG2081 Predicted flavoproteins Sme Sinorhizobium meliloti Length = 394 Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust. Identities = 224/397 (56%), Positives = 274/397 (69%), Gaps = 12/397 (3%) Query: 10 DVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNVGAGPQHYLS 69 DV IIGAGAAGMMCA AG+RGRRV++IDHA EKIRISGGGRCNFTN+ A P+++LS Sbjct: 6 DVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLS 65 Query: 70 QNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLKAECDVGNVS 129 NPHFC+SAL+RY PQDF+ LV+RH IG+HEK GQLFCD SA+DII ML AE V Sbjct: 66 GNPHFCKSALARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQ 125 Query: 130 WRMPCSVQAVGKSGEQFRIATSAGEIQAASLVIATGGLSIPKIGATDFAYRIARQFELKL 189 R+ S+ V ++ FR+ TSAG + AASLV+A+GG SIPK+GAT AYRIA QF L + Sbjct: 126 LRLETSIGEVERTASGFRVTTSAGTVDAASLVVASGGKSIPKMGATGLAYRIAEQFGLPV 185 Query: 190 IEPRPGLVPLTFDGKAWQSLTELAGIALEVEVETGVKKERGYFLEDLLFTHRGLSGPAIL 249 +E RP LVPLT D L LAG+A + E G + F E +L THRGLSGPAIL Sbjct: 186 VETRPALVPLTLDQAQLAKLGALAGVAADAEARFG----KAAFREAVLITHRGLSGPAIL 241 Query: 250 QISSYWKPGAPLTLNLLPQLDVAETLIEGKGSIKKN----LGNILAQWLPNRLAEGWLKI 305 QISSYW+ G + L L+P +D+A L KG + N + LA LP RLA+ + Sbjct: 242 QISSYWREGEEIVLRLMPDIDIASIL---KGMRRANGRQAVQTALADILPRRLAQ-FFAD 297 Query: 306 HGFDAGARIADMPDKSLKKLGDSLNRWVIVPSGSEGYRKAEVTLGGVDTRELSQQSMMVN 365 G +AD+ DK++ L S+ W + P+GSEGYR AEVTLGGVDTR L ++M Sbjct: 298 EAKLTGRMLADLSDKTIDALASSIQVWAVKPAGSEGYRTAEVTLGGVDTRALDSRTMQAK 357 Query: 366 KVPGLHFIGEAMDVTGWLGGYNFQWAWASGVAAGSAV 402 +VPGL+F+GE +DVTGWLGGYNFQWAWASG AG V Sbjct: 358 EVPGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQDV 394 >AGc1070 [R] COG2081 Predicted flavoproteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 420 Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust. Identities = 232/391 (59%), Positives = 279/391 (71%), Gaps = 7/391 (1%) Query: 10 DVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNVGAGPQHYLS 69 DV I+GAGAAGMM A AG+RGR V+++DHA EKIRISGGGRCNFTN+ AGP++YLS Sbjct: 33 DVLILGAGAAGMMGAIRAGKRGRSVIILDHARAPGEKIRISGGGRCNFTNIHAGPKNYLS 92 Query: 70 QNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLKAECDVGNVS 129 NPHF +SAL+RYTP DFI LV++HRI +HEK GQLFCDDSA+DII ML AE N Sbjct: 93 SNPHFAKSALARYTPHDFIALVEKHRIAWHEKTLGQLFCDDSAKDIIRMLLAEMQAVNAK 152 Query: 130 WRMPCSVQAVGKSGEQFRIATSAGEIQAASLVIATGGLSIPKIGATDFAYRIARQFELKL 189 R+ SV AV G +FR+ TS G I+A SLV+ATGG SIPK+GAT FAY+IA QF LKL Sbjct: 153 LRLETSVSAVTHDGGRFRVTTSGGVIEAESLVVATGGKSIPKMGATGFAYQIAEQFGLKL 212 Query: 190 IEPRPGLVPLTFDGKAWQSLTELAGIALEVEVETGVKKERGYFLEDLLFTHRGLSGPAIL 249 IEPRPGLVPLT D A + L+ LAG+A+ EV G + F E LLFTHRGLSGP+IL Sbjct: 213 IEPRPGLVPLTLDPAALEKLSPLAGVAVPAEVSHG----KTSFEEALLFTHRGLSGPSIL 268 Query: 250 QISSYWKPGAPLTLNLLPQLDVAETLIEGK-GSIKKNLGNILAQWLPNRLAEGWLKIHGF 308 QISSYW+ G + L L P D+ L + K + +++ L++ LP RLA+ ++ G Sbjct: 269 QISSYWREGDAIRLKLEPARDIVSLLRQAKQKNGRQSAQTALSEILPKRLAQHVVEQTGI 328 Query: 309 DAGARIADMPDKSLKKLGDSLNRWVIVPSGSEGYRKAEVTLGGVDTRELSQQSMMVNKVP 368 +ADM +K L KL + W I P+GSEGYR AEVTLGGVDT L +SM VP Sbjct: 329 T--GNLADMSEKVLAKLAAQVQDWQIKPAGSEGYRTAEVTLGGVDTTGLDSRSMAAKSVP 386 Query: 369 GLHFIGEAMDVTGWLGGYNFQWAWASGVAAG 399 GL+FIGE +DVTGWLGGYNFQWAWASG AAG Sbjct: 387 GLYFIGECVDVTGWLGGYNFQWAWASGQAAG 417 >CC1477 Non COG Length = 393 Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust. Identities = 211/395 (53%), Positives = 267/395 (67%), Gaps = 6/395 (1%) Query: 9 FDVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNVGAGPQHYL 68 FDV +IGAGAAGMMCA AG+RGR V++IDHA EKIRISGGGRCNFTN GA ++L Sbjct: 4 FDVVVIGAGAAGMMCAIEAGKRGRSVLVIDHAKAPGEKIRISGGGRCNFTNTGASIHNFL 63 Query: 69 SQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLKAECDVGNV 128 S NP F SAL RY P+DFI LV+R+ I +HEK GQLFCD SA+ II ML E V Sbjct: 64 SANPKFALSALRRYRPRDFIALVERYGIAYHEKTLGQLFCDGSAKQIITMLLTEMKAAGV 123 Query: 129 SWRMPCSVQAVGKSGEQFRIATSAGEIQAASLVIATGGLSIPKIGATDFAYRIARQFELK 188 + R+ SV++V K+ F ++ S+G++ ASLV+A+GG SIPK+GAT Y IA+QF L Sbjct: 124 TLRLETSVESVAKAVSGFEVSLSSGKVACASLVVASGGKSIPKMGATGLGYDIAKQFGLN 183 Query: 189 LIEPRPGLVPLTFDGKAWQSLTELAGIALEVEVETGVKKERGYFLEDLLFTHRGLSGPAI 248 +IE RP LVPLTF+ LT L+G+AL+ V G K F E +LFTHRGLSGP+I Sbjct: 184 IIETRPALVPLTFEAGMLARLTPLSGVALDAVVGHGKTK----FQEGMLFTHRGLSGPSI 239 Query: 249 LQISSYWKPGAPLTLNLLPQLDVAETLIEGKGSI-KKNLGNILAQWLPNRLAEGWLKIHG 307 LQISSYW+ G + +++ P +D L + + ++ + +LA LP R+A+ + Sbjct: 240 LQISSYWREGDEIRVDMAPGVDALAALKTARTATPRQAVATVLATLLPKRVAQVIAEEEA 299 Query: 308 FDAGARIADMPDKSLKKLGDSLNRWVIVPSGSEGYRKAEVTLGGVDTRELSQQSMMVNKV 367 D G IAD DK L +L ++N W P GSEGYR AEVTLGGVDT L +++ V Sbjct: 300 PDKG-NIADCSDKVLGRLASAVNAWTFKPVGSEGYRTAEVTLGGVDTEALDSRTLEAKAV 358 Query: 368 PGLHFIGEAMDVTGWLGGYNFQWAWASGVAAGSAV 402 PGL FIGE +DVTGWLGGYNFQWAWASG +AG +V Sbjct: 359 PGLFFIGEVVDVTGWLGGYNFQWAWASGWSAGQSV 393 >VC0080 [R] COG2081 Predicted flavoproteins Vch Vibrio cholerae Length = 398 Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust. Identities = 209/394 (53%), Positives = 263/394 (66%), Gaps = 5/394 (1%) Query: 10 DVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNVGAGPQHYLS 69 DV IIGAGAAG+MCAA A +RGR+V+L+DHA K KI ISGGGRCNFTN +YL Sbjct: 9 DVVIIGAGAAGLMCAAQAARRGRQVLLLDHAKKPGRKILISGGGRCNFTNYDVSAANYLC 68 Query: 70 QNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLKAECDVGNVS 129 QNPHF +SALS+YT DFI LV ++ I F E+ GQLFC DSA++I+ ML +ECD N+ Sbjct: 69 QNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDMLLSECDQPNIE 128 Query: 130 WRMPCSVQAVGKSGEQFRIATSAGEIQAASLVIATGGLSIPKIGATDFAYRIARQFELKL 189 R + A+ + + F + T+ GEI+ ASLV+ATGGLS+PK+GAT F Y+IA QF L + Sbjct: 129 QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPFGYKIAEQFGLPV 188 Query: 190 IEPRPGLVPLTFDGKAWQSLTELAGIALEVEVETGVKKERGYFLEDLLFTHRGLSGPAIL 249 I GLVP T + + L+G+A+ VE+ K F E LLFTHRGLSGPA+L Sbjct: 189 ISTSAGLVPFTLHVQDKEDFAPLSGVAIPVEMRAECGKT---FKEALLFTHRGLSGPAVL 245 Query: 250 QISSYWKPGAPLTLNLLPQLDVAETL-IEGKGSIKKNLGNILAQWLPNRLAEGWLKIHGF 308 QISSYW PG +T NL+P +D+AE L E + ++L N L++ LP RL E ++ F Sbjct: 246 QISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPKRLVEVLIERQLF 305 Query: 309 DAGARIADMPDKSLKKLGDSLNRWVIVPSGSEGYRKAEVTLGGVDTRELSQQSMMVNKVP 368 A + K L + L +W IVP+G+EGYR AEVTLGGVDT LS ++M V Sbjct: 306 -ADKPLKQYSPKELDAVQTRLEQWSIVPNGTEGYRTAEVTLGGVDTDCLSSKTMECKTVK 364 Query: 369 GLHFIGEAMDVTGWLGGYNFQWAWASGVAAGSAV 402 GL FIGE MDVTGWLGGYNFQWAW+SG AG V Sbjct: 365 GLFFIGEVMDVTGWLGGYNFQWAWSSGYVAGQWV 398