BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0722.p (420 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1187 [K] COG1158 Transcription termination factor Rso Ralston... 762 0.0 NMA0825 [K] COG1158 Transcription termination factor NmA Neisser... 655 0.0 NMB0617 [K] COG1158 Transcription termination factor Nme Neisser... 655 0.0 VC0307 [K] COG1158 Transcription termination factor Vch Vibrio c... 629 e-180 BU596 [K] COG1158 Transcription termination factor Buc Buchnera ... 626 e-179 >RSc1187 [K] COG1158 Transcription termination factor Rso Ralstonia solanacearum Length = 420 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/420 (85%), Positives = 397/420 (94%) Query: 1 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHL+ELK++HVS LLEMA L+I+NA R+RKQELMFAILKK+AK GE IFGDG LEVLPD Sbjct: 1 MHLTELKSLHVSQLLEMAGQLEIDNAQRMRKQELMFAILKKKAKQGETIFGDGTLEVLPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSP+ SY+ASTDDIYISPSQIRRFNLHTGD+IEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180 +PPEA K+RI+FENLTPLHPN+ L LERD++ EENITGRIID+IAP+GRGQR LLVASP Sbjct: 121 AQPPEAVKNRIMFENLTPLHPNRTLTLERDIKAEENITGRIIDMIAPIGRGQRALLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGK+VMLQHIAHAIT NHP+ + VLLIDERPEEVTEMQR+VRGEVVASTFDEPA RHV Sbjct: 181 KSGKTVMLQHIAHAITANHPEAELFVLLIDERPEEVTEMQRTVRGEVVASTFDEPAVRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMV+EKAKRLVE+KKDVVI+LDSITRLARAYNTV+P SGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTSGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARN+EEGGSLTII TALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL Sbjct: 301 FGAARNLEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 420 +KSGTRREELLIKPD LQK+W+LRK ++DMDE+EAMEF+LDK+KSTKNNAEFFDMMRRG+ Sbjct: 361 NKSGTRREELLIKPDILQKVWILRKFIHDMDEVEAMEFLLDKLKSTKNNAEFFDMMRRGS 420 >NMA0825 [K] COG1158 Transcription termination factor NmA Neisseria meningitidis Z2491 Length = 419 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/417 (73%), Positives = 368/417 (88%) Query: 1 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MH+SEL+ +H+S LLE+A IENA R RKQ+L+FAI+++ K GE G LE+LPD Sbjct: 1 MHVSELQTLHISKLLELAEEHGIENANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRS D SY+A DDIY+SP+QIRRFNLHTGD+IEG VR PKD ERYFALV++D +N Sbjct: 61 GFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTIN 120 Query: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180 G+ PE +H+ILFENLTPL P + L+LERD++ EEN+TGR IDLI+P+G+GQR LLVA P Sbjct: 121 GDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGK+VMLQ+IAHA+T+N+P+ +IVLLIDERPEEVTEM RSVRGEVV+STFDEPA RHV Sbjct: 181 KSGKTVMLQNIAHAVTSNYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKR+VE KKDVVILLDSITRLARAYNTV+P SGK+LTGGVDANAL RPKRF Sbjct: 241 QVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRF 300 Query: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARNVEEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+HL+RR+AEKR++PAIN+ Sbjct: 301 FGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHLDRRMAEKRLFPAINI 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMR 417 +KSGTRREELL+ DQLQ++W+LRK ++ MDEIEA EF++ K+K++KNN +FF++MR Sbjct: 361 NKSGTRREELLVPNDQLQRMWLLRKFLHPMDEIEAAEFLIGKIKASKNNDDFFELMR 417 >NMB0617 [K] COG1158 Transcription termination factor Nme Neisseria meningitidis MC58 Length = 419 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/417 (73%), Positives = 367/417 (88%) Query: 1 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MH+SEL+ +H+S LLE+A IENA R RKQ+L+FAI+++ K GE G LE+LPD Sbjct: 1 MHVSELQTLHISKLLELAEEHGIENANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRS D SY+A DDIY+SP+QIRRFNLHTGD+IEG VR PKD ERYFALV++D +N Sbjct: 61 GFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDTIN 120 Query: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180 G+ PE +H+ILFENLTPL P + L+LERD++ EEN+TGR IDLI+P+G+GQR LLVA P Sbjct: 121 GDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGK+VMLQ+IAHA+T N+P+ +IVLLIDERPEEVTEM RSVRGEVV+STFDEPA RHV Sbjct: 181 KSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKR+VE KKDVVILLDSITRLARAYNTV+P SGK+LTGGVDANAL RPKRF Sbjct: 241 QVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPTSGKILTGGVDANALHRPKRF 300 Query: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARNVEEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNME+HL+RR+AEKR++PAIN+ Sbjct: 301 FGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHLDRRMAEKRLFPAINI 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMR 417 +KSGTRREELL+ DQLQ++W+LRK ++ MDEIEA EF++ K+K++KNN +FF++MR Sbjct: 361 NKSGTRREELLVPNDQLQRMWLLRKFLHPMDEIEAAEFLIGKIKASKNNDDFFELMR 417 >VC0307 [K] COG1158 Transcription termination factor Vch Vibrio cholerae Length = 419 Score = 629 bits (1623), Expect = e-180, Method: Compositional matrix adjust. Identities = 298/418 (71%), Positives = 366/418 (87%) Query: 1 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 M+L+ELK VS L+++ SL +EN ARLRKQ+++FAILK AKSGE IFGDG LE+L D Sbjct: 1 MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRS D+SY+A DDIY+SPSQIRRFNL TGDSI G++R PK+GERYFAL+KV+ VN Sbjct: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120 Query: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180 + P+ ++++ILFENLTPLH N+ + +ER E+IT R++DL AP+G+GQRGL+VA P Sbjct: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 K+GK+++LQ+IA +I +NHP+ V++VLLIDERPEEVTEMQR V+GEVVASTFDEPA+RHV Sbjct: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMV+EKAKRLVE KKDVVILLDSITRLARAYNTV+PASGKVLTGGVDANAL RPKRF Sbjct: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 Query: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARNVEEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+HL R++AEKRV+PAI+ Sbjct: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRR 418 ++SGTRREELL K D+LQK+W+LRK+++ M E +AMEF++DK+ TK N EFFD MRR Sbjct: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRR 418 >BU596 [K] COG1158 Transcription termination factor Buc Buchnera sp. APS Length = 419 Score = 626 bits (1614), Expect = e-179, Method: Compositional matrix adjust. Identities = 294/418 (70%), Positives = 365/418 (87%) Query: 1 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 M+L+ LK M VS L+ + + +EN AR+RKQ+++FAILK+ AKSGE IFGDG LE+L D Sbjct: 1 MNLTALKNMPVSELITLGEKMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRS D+SY+A DDIY+SPSQIRRFNL TGD+I G++R PK+GERYFAL+KV++VN Sbjct: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVN 120 Query: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180 + PE ++ +ILFENLTPLH N L++ER E++T R++DL +P+GRGQRGL+VA P Sbjct: 121 YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 K+GK+++LQ+IA +I NHPD V++VLLIDERPEEVTEMQR V+GEVVASTFDEPA+RHV Sbjct: 181 KAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMV+EKAKRLVE KKDV+ILLDSITRLARAYNTV+PASGKVLTGGVDANAL RPKRF Sbjct: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 Query: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARNVEEGGSLTIIATAL++TGS+MD+VIYEEFKGTGNME+ L R++AEKRV+PAI+ Sbjct: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELPLSRKIAEKRVFPAIDY 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRR 418 ++SGTR+EELL PD+LQK+W+LRK+++ M EI+AMEF+L+K+ TK N EFFDMM+R Sbjct: 361 NRSGTRKEELLTLPDELQKMWILRKIIHPMSEIDAMEFLLNKLAMTKTNDEFFDMMKR 418