BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0717.p         (66 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SA2341 [C] COG1012 NAD-dependent aldehyde dehydrogenases Sau Sta...    30   1.7  
RSp0952 [L] COG4584 Transposase and inactivated derivatives Rso ...    28   4.6  
RSp0451 [L] COG4584 Transposase and inactivated derivatives Rso ...    28   4.7  
RSc2333 [L] COG4584 Transposase and inactivated derivatives Rso ...    28   4.7  
RSc0247 [L] COG4584 Transposase and inactivated derivatives Rso ...    28   4.7  

>SA2341 [C] COG1012 NAD-dependent aldehyde dehydrogenases Sau
           Staphylococcus aureus N315
          Length = 514

 Score = 29.6 bits (65), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 14  AIAGSPQDITPARYRGRSV--LAGKTPHLAQHSARRQSIFRCLSTGRRVPSWNVP 66
           A+  + + I    Y  RS+  LA   P L +     +  ++ + TG  +P WN P
Sbjct: 130 AVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFP 184


>RSp0952 [L] COG4584 Transposase and inactivated derivatives Rso Ralstonia
           solanacearum
          Length = 354

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 10/43 (23%)

Query: 23  TPARYRGRSVLAGKTPHLAQHSARRQSIFRCLSTGRRVPSWNV 65
           TPA Y GRSV AG TPH     A R +           P W+V
Sbjct: 303 TPALYAGRSVRAGATPHETPKPASRFA----------TPDWHV 335


>RSp0451 [L] COG4584 Transposase and inactivated derivatives Rso Ralstonia
           solanacearum
          Length = 347

 Score = 28.1 bits (61), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 10/43 (23%)

Query: 23  TPARYRGRSVLAGKTPHLAQHSARRQSIFRCLSTGRRVPSWNV 65
           TPA Y GRSV AG TPH     A R +           P W+V
Sbjct: 296 TPALYAGRSVRAGATPHETPKPASRFA----------TPDWHV 328


>RSc2333 [L] COG4584 Transposase and inactivated derivatives Rso Ralstonia
           solanacearum
          Length = 347

 Score = 28.1 bits (61), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 10/43 (23%)

Query: 23  TPARYRGRSVLAGKTPHLAQHSARRQSIFRCLSTGRRVPSWNV 65
           TPA Y GRSV AG TPH     A R +           P W+V
Sbjct: 296 TPALYAGRSVRAGATPHETPKPASRFA----------TPDWHV 328


>RSc0247 [L] COG4584 Transposase and inactivated derivatives Rso Ralstonia
           solanacearum
          Length = 347

 Score = 28.1 bits (61), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 10/43 (23%)

Query: 23  TPARYRGRSVLAGKTPHLAQHSARRQSIFRCLSTGRRVPSWNV 65
           TPA Y GRSV AG TPH     A R +           P W+V
Sbjct: 296 TPALYAGRSVRAGATPHETPKPASRFA----------TPDWHV 328