BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0711.p (307 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2544 [L] COG4974 Site-specific recombinase XerD Rso Ralstonia... 416 e-116 STM3044 [L] COG4974 Site-specific recombinase XerD Sty Salmonell... 316 4e-86 xerD [L] COG4974 Site-specific recombinase XerD Eco Escherichia ... 312 7e-85 ZxerD [L] COG4974 Site-specific recombinase XerD EcZ Escherichia... 309 4e-84 ECs3766 [L] COG4974 Site-specific recombinase XerD Ecs Escherich... 309 4e-84 >RSc2544 [L] COG4974 Site-specific recombinase XerD Rso Ralstonia solanacearum Length = 308 Score = 416 bits (1069), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/298 (69%), Positives = 240/298 (80%), Gaps = 2/298 (0%) Query: 11 PEASREAIDEFCDSLWLEDGLSSNTLEAYRRDMTLYAHWLHQERAKPLYETQAEDLYAYF 70 P +S EAI FCD+LWLEDGL+ NTL+AYRRD+TLYA WL R K L +T+ DL YF Sbjct: 12 PPSSTEAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWL-AGRGKALDQTEDVDLSDYF 70 Query: 71 AARHDETKPSSSNRRLAVLRRFFQLALRQNRVAADPCLKMRTARQPQRLPKTLSEGQVEA 130 AARH+++ S++NRR V +RFFQ ALR++ V+ADP + TA+QP R+PKTLSE QVEA Sbjct: 71 AARHEDSLASTANRRRTVFKRFFQWALREHLVSADPTRLLSTAKQPPRVPKTLSEAQVEA 130 Query: 131 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKTIEVGMNEGVLRVTG-KGSKTRLV 189 L+AAPDV PLGLRDRAMIELMYASGLRVSE+V LKT+EVG+NEGV+RV G KG K RLV Sbjct: 131 LIAAPDVDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKDRLV 190 Query: 190 PFGEEAGSWIARYLAEARGQILQGQIDDALFVTARGAAMTRQMFWTLIKKYALQAGITVR 249 PFG EAG W+ RYL + R +L + DALFVTARG MTRQ FW LIK+YA +A I Sbjct: 191 PFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQAFWYLIKRYAQRADIHAP 250 Query: 250 LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 LSPHTLRHAFATHLLNHGADLRVVQ+LLGHADISTTQIYTHVARERL+ LHA HHPRG Sbjct: 251 LSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPRG 308 >STM3044 [L] COG4974 Site-specific recombinase XerD Sty Salmonella typhimurium LT2 Length = 298 Score = 316 bits (810), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 164/292 (56%), Positives = 203/292 (69%), Gaps = 3/292 (1%) Query: 18 IDEFCDSLWLEDGLSSNTLEAYRRDMTLYAHWLHQERAKPLYETQAEDLYAYFAARHDE- 76 I++F D+LWLE L+ NTL AYRRD+++ WLH R K L QA+DL A R + Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHH-RGKTLATAQADDLQTLLAERVEGG 66 Query: 77 TKPSSSNRRLAVLRRFFQLALRQNRVAADPCLKMRTARQPQRLPKTLSEGQVEALLAAPD 136 K +SS R L+ +RRFFQ R+ DP ++ + + PQRLPK LSE QVE LL AP Sbjct: 67 YKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPL 126 Query: 137 VSTPLGLRDRAMIELMYASGLRVSELVLLKTIEVGMNEGVLRVTGKGSKTRLVPFGEEAG 196 + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP GEEA Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 Query: 197 SWIARYLAEARGQILQGQIDDALFVTARGAAMTRQMFWTLIKKYALQAGI-TVRLSPHTL 255 W+ YL R +L G D LF + R MTRQ FW IK YA+ AGI + +LSPH L Sbjct: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 Query: 256 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 RHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >xerD [L] COG4974 Site-specific recombinase XerD Eco Escherichia coli K12 Length = 298 Score = 312 bits (799), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 162/292 (55%), Positives = 201/292 (68%), Gaps = 3/292 (1%) Query: 18 IDEFCDSLWLEDGLSSNTLEAYRRDMTLYAHWLHQERAKPLYETQAEDLYAYFAARHDE- 76 I++F D+LWLE L+ NTL AYRRD+++ WLH R L Q++DL A A R + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAERLEGG 66 Query: 77 TKPSSSNRRLAVLRRFFQLALRQNRVAADPCLKMRTARQPQRLPKTLSEGQVEALLAAPD 136 K +SS R L+ +RR FQ R+ DP + + + PQRLPK LSE QVE LL AP Sbjct: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Query: 137 VSTPLGLRDRAMIELMYASGLRVSELVLLKTIEVGMNEGVLRVTGKGSKTRLVPFGEEAG 196 + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP GEEA Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 Query: 197 SWIARYLAEARGQILQGQIDDALFVTARGAAMTRQMFWTLIKKYALQAGI-TVRLSPHTL 255 W+ YL R +L G D LF + R MTRQ FW IK YA+ AGI + +LSPH L Sbjct: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 Query: 256 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 RHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >ZxerD [L] COG4974 Site-specific recombinase XerD EcZ Escherichia coli O157:H7 EDL933 Length = 298 Score = 309 bits (792), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 161/292 (55%), Positives = 200/292 (68%), Gaps = 3/292 (1%) Query: 18 IDEFCDSLWLEDGLSSNTLEAYRRDMTLYAHWLHQERAKPLYETQAEDLYAYFAARHDE- 76 I++F D+LWLE L+ NTL AYRRD+++ WLH R L Q++DL A A R + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAERLEGG 66 Query: 77 TKPSSSNRRLAVLRRFFQLALRQNRVAADPCLKMRTARQPQRLPKTLSEGQVEALLAAPD 136 K +SS R L+ +RR FQ R+ DP + + + PQRLPK LSE QVE LL AP Sbjct: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Query: 137 VSTPLGLRDRAMIELMYASGLRVSELVLLKTIEVGMNEGVLRVTGKGSKTRLVPFGEEAG 196 + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP GEEA Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 Query: 197 SWIARYLAEARGQILQGQIDDALFVTARGAAMTRQMFWTLIKKYALQAGI-TVRLSPHTL 255 W+ YL R +L G D LF + R MTRQ W IK YA+ AGI + +LSPH L Sbjct: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTLWHRIKHYAVLAGIDSEKLSPHVL 246 Query: 256 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 RHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >ECs3766 [L] COG4974 Site-specific recombinase XerD Ecs Escherichia coli O157:H7 Length = 298 Score = 309 bits (792), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 161/292 (55%), Positives = 200/292 (68%), Gaps = 3/292 (1%) Query: 18 IDEFCDSLWLEDGLSSNTLEAYRRDMTLYAHWLHQERAKPLYETQAEDLYAYFAARHDE- 76 I++F D+LWLE L+ NTL AYRRD+++ WLH R L Q++DL A A R + Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAERLEGG 66 Query: 77 TKPSSSNRRLAVLRRFFQLALRQNRVAADPCLKMRTARQPQRLPKTLSEGQVEALLAAPD 136 K +SS R L+ +RR FQ R+ DP + + + PQRLPK LSE QVE LL AP Sbjct: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Query: 137 VSTPLGLRDRAMIELMYASGLRVSELVLLKTIEVGMNEGVLRVTGKGSKTRLVPFGEEAG 196 + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP GEEA Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 Query: 197 SWIARYLAEARGQILQGQIDDALFVTARGAAMTRQMFWTLIKKYALQAGI-TVRLSPHTL 255 W+ YL R +L G D LF + R MTRQ W IK YA+ AGI + +LSPH L Sbjct: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTLWHRIKHYAVLAGIDSEKLSPHVL 246 Query: 256 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 RHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298