BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0710.p         (167 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2543 [L] COG0350 Methylated DNA-protein cysteine methyltransf...   176   2e-44
TM0887 [L] COG0350 Methylated DNA-protein cysteine methyltransfe...    92   5e-19
Cj0836 [L] COG0350 Methylated DNA-protein cysteine methyltransfe...    92   5e-19
HP0676 [L] COG0350 Methylated DNA-protein cysteine methyltransfe...    84   1e-16
AF2314 [L] COG0350 Methylated DNA-protein cysteine methyltransfe...    84   2e-16

>RSc2543 [L] COG0350 Methylated DNA-protein cysteine methyltransferase Rso
           Ralstonia solanacearum
          Length = 173

 Score =  176 bits (447), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 111/161 (68%), Gaps = 4/161 (2%)

Query: 7   PLTAL---FSAVVHTPFGGMGIRSQAGALVEMVYLPRHYAEKEATDAVAAQAVQQIGRYL 63
           P TA+   F AV+  PFG +G+R   GAL E+VYLP      ++   +  +   Q+  Y 
Sbjct: 11  PHTAMPSPFDAVLEAPFGKLGVRVVEGALWEIVYLPDSARTVDSAAPLIRRLAHQLDAYY 70

Query: 64  ADPGFRFRLPLLPVGSVFQQRVWQAIAAIPCGQVQTYGQVAKRIQSAPRAVGQACGANWY 123
            +    F +PL   G+ FQ RVW AI A+P G V TYG +AK+I+SAPRAVGQACGANWY
Sbjct: 71  DNADAVFDVPLTHTGTGFQHRVWDAICAVPRGAVTTYGTLAKQIRSAPRAVGQACGANWY 130

Query: 124 PLVVPCHRVTAAGGLGGFSHHDDEDGFHLEVKRWLLRHEGV 164
           P+++PCHRV +A G+GGFS+H DEDGFHL VKRWLLRHEGV
Sbjct: 131 PILIPCHRVVSASGIGGFSNH-DEDGFHLNVKRWLLRHEGV 170


>TM0887 [L] COG0350 Methylated DNA-protein cysteine methyltransferase Tma
           Thermotoga maritima
          Length = 139

 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 82/137 (59%), Gaps = 7/137 (5%)

Query: 21  GGMGIRSQAGALVEMVYLPRHYAEKEATDAVAAQAVQQIGRYLADPGFRFRLPLLPVGSV 80
           G + ++++ G +V+++       E E ++ +    +++I  YL+     F   +   G+ 
Sbjct: 8   GNISVQTENGKVVKIIL---GSNETEGSEEI----LREIEEYLSGQRKSFSFQVEIRGTP 60

Query: 81  FQQRVWQAIAAIPCGQVQTYGQVAKRIQSAPRAVGQACGANWYPLVVPCHRVTAAGGLGG 140
           FQ+RVW+ +  IP G+ +TY ++AK++ ++PRAVGQA   N  PL +PCHRV +  GLGG
Sbjct: 61  FQKRVWEEVRKIPYGETKTYSEIAKKLGTSPRAVGQALSKNPLPLYIPCHRVVSKKGLGG 120

Query: 141 FSHHDDEDGFHLEVKRW 157
           FS   +   + ++++R+
Sbjct: 121 FSAGLEWKKYLIDLERF 137


>Cj0836 [L] COG0350 Methylated DNA-protein cysteine methyltransferase Cje
           Campylobacter jejuni
          Length = 150

 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 11/157 (7%)

Query: 11  LFSAVVHTPFGGMGIRSQAGALVEMVYLPRHYAEKEATDAVAAQAVQQIGRYLADPGFRF 70
           +F      P   + + S    L  + +     +EK  +  +   A  ++  Y      +F
Sbjct: 1   MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCS--LLDLAKYELDLYFTHKLRKF 58

Query: 71  RLPLLPVGSVFQQRVWQAIAAIPCGQVQTYGQVAKRIQ--SAPRAVGQACGANWYPLVVP 128
            +P+L  G+ F+ +V++A+  IP G++ TY  +A++I    A RAVG A   N  P+ +P
Sbjct: 59  SIPVLIQGTDFESKVYKALMEIPYGKIATYKDIAEKINHPKAFRAVGNANSKNQIPIFIP 118

Query: 129 CHRVTAAGGLGGFSHHDDEDGFHLEVKRWLLRHEGVN 165
           CHRV A+ G+GG++         LE+KR+LL +EGVN
Sbjct: 119 CHRVIASNGIGGYNG-------GLEIKRFLLENEGVN 148


>HP0676 [L] COG0350 Methylated DNA-protein cysteine methyltransferase Hpy
           Helicobacter pylori 26695
          Length = 168

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 10/148 (6%)

Query: 19  PFGGMGIRSQAGALVEMVYLPRHYAEKEATDAVAAQAVQQIGRYLADPGFRFRLPLLPVG 78
           P   + + +    L+ + +   +++     +     +VQ + RY     F F  PL  +G
Sbjct: 15  PLEYLHLCANESHLLRLDFDAANFSHNTPMNTPLKLSVQALERYFLGQLFEFNTPLDLIG 74

Query: 79  SVFQQRVWQAIAAIPCGQVQTYGQVAKRIQS--APRAVGQACGANWYPLVVPCHRVTAAG 136
           + FQ++VW A+  IP G+ ++Y ++AK I +  + RAVG A   N   L+VPCHRV    
Sbjct: 75  TFFQKQVWSALMTIPYGKTKSYDEIAKLINNPRSCRAVGNANRNNPISLIVPCHRVVRKN 134

Query: 137 G-LGGFSHHDDEDGFHLEVKRWLLRHEG 163
           G LGG++         +EVK+WLL  E 
Sbjct: 135 GTLGGYNG-------GIEVKKWLLEFES 155


>AF2314 [L] COG0350 Methylated DNA-protein cysteine methyltransferase Afu
           Archaeoglobus fulgidus
          Length = 147

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 3/113 (2%)

Query: 53  AQAVQQIGRYLADPGFRFRLPLLPVGSVFQQRVWQAIAAIPCGQVQTYGQVAKRIQSAPR 112
           ++  +Q+ RY +      R+P     S F +RV + ++ IP G V+ Y  +AK + ++PR
Sbjct: 36  SEYARQLERYFSGERVEVRIPYRLKASSFTRRVLEEVSRIPYGMVRMYSDIAKALNTSPR 95

Query: 113 AVGQACGANWYPLVVPCHRVTAAGGLGGFS-HHDDEDGFHLEVKRWLLRHEGV 164
           AVGQA   N  P+++PCHRV     +GG++    D DG  L  K+ LLR EGV
Sbjct: 96  AVGQAVKRNPLPVIIPCHRVVGKKEIGGYTVSCSDIDGKSL--KKRLLRLEGV 146