BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0706.p (338 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PM0275 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 332 9e-91 PA5167 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 331 2e-90 PA0884 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 314 2e-85 PA4616 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 277 2e-74 BS_ydbE [G] COG1638 TRAP-type C4-dicarboxylate transport system,... 267 3e-71 >PM0275 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Pmu Pasteurella multocida Length = 372 Score = 332 bits (850), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 163/325 (50%), Positives = 219/325 (67%), Gaps = 1/325 (0%) Query: 3 LKSIVFAMATAAVVNVGLAASALAQQPIIIKFSHVVANDTPKGKAAERFKELAEKATKGR 62 LKS + +A +++ + SA A +PI+IKFSHVVAN+TPKG+ A F++L E+ G+ Sbjct: 42 LKSTLKKAVSAMIISAAFSFSAWANEPIVIKFSHVVANETPKGQGALMFQKLVEERLAGK 101 Query: 63 VKVEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLY 122 VKVEVYPNS+LY D +E+EAL L VQMLAPSLAKF K+ ++FDLP++F E + Sbjct: 102 VKVEVYPNSSLYGDGKEMEALLLNNVQMLAPSLAKFDKY-TKKIQIFDLPFLFDDIEAVQ 160 Query: 123 RVTEGPIGRELFKKLEPKGITGLAYWDNGFKVMSANKPLRHPNDFRGLKMRIQSSKVLDA 182 R + G+ L K +E KGITGL YW+N K +SANK LR P D RGLK R+Q+S+VLDA Sbjct: 161 RFEQSEAGKSLLKSMEEKGITGLGYWNNDLKQLSANKELREPKDARGLKFRVQNSEVLDA 220 Query: 183 QMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKYVTVSNHGYLGYAV 242 Q +AL A P+ +AF E+YQ LQTGVV+G ENP SN+Y+QK+HEVQK++T SNHG L Y V Sbjct: 221 QFKALKAVPRKMAFGEMYQGLQTGVVNGAENPYSNIYSQKIHEVQKFITESNHGLLSYMV 280 Query: 243 IVNKKFWDGLPSDIRTELEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEK 302 IVN FW+ +P DIR EL + + + N + N A + + +T+ LT ++ Sbjct: 281 IVNTNFWNSIPEDIRAELSKILDEVSVEVNKKSHDLNLADKQKIIDSKASTIITLTPEQR 340 Query: 303 AEWRKALLPVQQQMASRIGKDLIDA 327 +WR A+ PV +Q IG DLI A Sbjct: 341 EKWRDAVRPVWKQFEGEIGADLIQA 365 >PA5167 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Pae Pseudomonas aeruginosa Length = 331 Score = 331 bits (848), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 163/319 (51%), Positives = 218/319 (68%), Gaps = 1/319 (0%) Query: 9 AMATAAVVNVGLAASALAQQPIIIKFSHVVANDTPKGKAAERFKELAEKATKGRVKVEVY 68 A A +++ +A A PI+IKFSHVVA TPKG+ A FK+L E+ G+VKVEVY Sbjct: 6 AKALVCALSLTVAGIVQAADPIVIKFSHVVAEHTPKGQGALLFKKLVEERLPGKVKVEVY 65 Query: 69 PNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGP 128 PNS+L+ D +E+EAL LG VQ++APSLAKF K+ ++FDLP++F + + + R + P Sbjct: 66 PNSSLFGDGKEMEALLLGDVQIIAPSLAKFEQY-TKKLQIFDLPFLFDNIQAVDRFQQSP 124 Query: 129 IGRELFKKLEPKGITGLAYWDNGFKVMSANKPLRHPNDFRGLKMRIQSSKVLDAQMRALG 188 G+EL ++ KGITGL YW NG K +SANKPLR P D RGLK R+Q+SKVL+ Q +A+ Sbjct: 125 QGKELLTSMQDKGITGLGYWHNGMKQLSANKPLREPKDARGLKFRVQASKVLEEQFKAVR 184 Query: 189 ANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKYVTVSNHGYLGYAVIVNKKF 248 ANP+ ++F+EVYQ LQTGVV+GTENP SN+Y+QKMHEVQKY+T S+HG L Y VI N KF Sbjct: 185 ANPRKMSFAEVYQGLQTGVVNGTENPWSNIYSQKMHEVQKYITESDHGVLDYMVITNTKF 244 Query: 249 WDGLPSDIRTELEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEWRKA 308 W+GLP D+R L M + T N A+ N + + + + LT ++AEWRKA Sbjct: 245 WNGLPEDVRGVLAKTMDEVTVEVNKQAEALNQGDKQRIVEAKTSEIIELTPEQRAEWRKA 304 Query: 309 LLPVQQQMASRIGKDLIDA 327 + PV ++ IG DLI A Sbjct: 305 MQPVWKKFEGEIGADLIKA 323 >PA0884 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Pae Pseudomonas aeruginosa Length = 331 Score = 314 bits (805), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 159/325 (48%), Positives = 220/325 (67%), Gaps = 3/325 (0%) Query: 3 LKSIVFAMATAAVVNVGLAASALAQQPIIIKFSHVVANDTPKGKAAERFKELAEKATKGR 62 K++V A+ A + +G + A A QPI+IKFSHVVA +TPKG+ A FK+L E+ GR Sbjct: 2 FKTMVRALLCA--LAIGGSCLANAAQPIVIKFSHVVAENTPKGQGALLFKKLVEQRLGGR 59 Query: 63 VKVEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLY 122 V+V+VYPNS+L+ D +E+EAL LG VQMLAPSLAKF ++ ++FDLP++F + + Sbjct: 60 VEVDVYPNSSLFGDGKEMEALLLGDVQMLAPSLAKFEQY-TRKVQIFDLPFLFDDIQAVD 118 Query: 123 RVTEGPIGRELFKKLEPKGITGLAYWDNGFKVMSANKPLRHPNDFRGLKMRIQSSKVLDA 182 R P GR L ++ KGI GLAYW NG K +SAN+PL P D RGLK R+Q+S VL+ Sbjct: 119 RFQRSPQGRALLTSMQGKGILGLAYWHNGMKQLSANRPLLEPEDARGLKFRVQASDVLNE 178 Query: 183 QMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKYVTVSNHGYLGYAV 242 Q R L A + ++F+EVYQ LQTGVV+GTEN SN +QK++EVQKY T SNHG + Y V Sbjct: 179 QFRQLRAISRKMSFAEVYQGLQTGVVNGTENTWSNYESQKVNEVQKYFTESNHGLVDYMV 238 Query: 243 IVNKKFWDGLPSDIRTELEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEK 302 I N KFW+GLP+DIR EL+ M + T N A++ N A + +G + ++ L+ ++ Sbjct: 239 ITNAKFWNGLPADIREELQRIMDEVTVQVNLEAERLNRDARQRILASGASEIHTLSPQQR 298 Query: 303 AEWRKALLPVQQQMASRIGKDLIDA 327 A+WR+A+ PV Q+ +G DL+ A Sbjct: 299 ADWRQAMQPVWQKFRGNVGADLLQA 323 >PA4616 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Pae Pseudomonas aeruginosa Length = 332 Score = 277 bits (709), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 149/322 (46%), Positives = 203/322 (63%), Gaps = 9/322 (2%) Query: 10 MATAAVVNVGLAASALAQQPIIIKFSHVVANDTPKGKAAERFKELAEKATKGRVKVEVYP 69 +A AA+ V A A P++IKFSHVV++DTPKGK A FK+LAE+ G+VKVEVYP Sbjct: 8 VALAALFAVSAVAHAEDAGPVVIKFSHVVSDDTPKGKGALLFKKLAEERLPGKVKVEVYP 67 Query: 70 NSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGPI 129 NSTL+ D +E+EAL+ VQMLA SL+KF P K+ +VFDLP++F E L R + Sbjct: 68 NSTLFGDADEIEALRANKVQMLATSLSKFEPY-TKQLQVFDLPFLFDDLEALKRFQKRDK 126 Query: 130 GRELFKKLEPKGITGLAYWDNGFKVMSANKPLRHPNDFRGLKMRIQSSKVLDAQMRALGA 189 REL + + GI GLAYW+NG K +SA + L P+D +GL RIQ S VL+AQ LGA Sbjct: 127 SRELLRSMAKHGIYGLAYWNNGMKQLSATRELHRPDDAKGLVFRIQPSSVLEAQFAMLGA 186 Query: 190 NPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKYVTVSNHGYLGYAVIVNKKFW 249 + L+++E +A+Q G V GTEN SNL QK+ VQ Y+T +NHG L Y +I + FW Sbjct: 187 TAKQLSYAETLKAMQAGSVQGTENTWSNLAGQKIDSVQPYITETNHGALSYMLITSSAFW 246 Query: 250 DGLPSDIRTELEGAMKDAT----KYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEW 305 G+P RTELE + + T K A A+ Q+E + LAA GK+ + L+ E W Sbjct: 247 TGIPYQTRTELESIVDEVTLVVNKEAEALNQKEREHLLAA----GKSRLVSLSAEEHEAW 302 Query: 306 RKALLPVQQQMASRIGKDLIDA 327 R A+ P+ + ++IG D++ A Sbjct: 303 RNAMKPLWKNYEAQIGSDVLRA 324 >BS_ydbE [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Bsu Bacillus subtilis Length = 350 Score = 267 bits (683), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 131/300 (43%), Positives = 188/300 (62%), Gaps = 2/300 (0%) Query: 27 QQPIIIKFSHVVANDTPKGKAAERFKELAEKATKGRVKVEVYPNSTLYKDKEELEALQLG 86 Q I+ KFSHVVA +TPKG AA +F +L + + G++K+EV+PN +LY D EE+EALQ G Sbjct: 42 QDQIVFKFSHVVAENTPKGLAANKFADLVNEKSGGKIKIEVFPNGSLYSDIEEIEALQNG 101 Query: 87 AVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGPIGRELFKKLEPKGITGLA 146 VQ +APS +K G L E+ V DLPY F + + G IG +LF L+ + GLA Sbjct: 102 DVQFIAPSTSKLGMLS-PEWGVLDLPYAFTDYNAVKKGLNGSIGTQLFDSLKKNQLKGLA 160 Query: 147 YWDNGFKVMSANK-PLRHPNDFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQT 205 YW NGFK ++ N+ P++ P+D +G +RI S V++ Q + LGA P +F+ +Q L+ Sbjct: 161 YWTNGFKQITTNQGPVKTPDDLKGQDLRIMQSDVIEDQFKLLGATPHQESFNSTFQLLEN 220 Query: 206 GVVDGTENPPSNLYTQKMHEVQKYVTVSNHGYLGYAVIVNKKFWDGLPSDIRTELEGAMK 265 VVDG EN SN+Y++K + VQ Y+T+S+HGYLGYAV+ ++ FW + R L AMK Sbjct: 221 NVVDGEENTISNIYSKKFYNVQDYLTISSHGYLGYAVMTDEHFWKAQTPETRRILTEAMK 280 Query: 266 DATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEWRKALLPVQQQMASRIGKDLI 325 + T++ A+Q N L ++K +Y L+D EK EW K L PV +Q G++LI Sbjct: 281 ETTEWNETYAEQMNKEQLEEIKKNSAIHIYELSDKEKQEWMKRLDPVYRQYEPIFGRELI 340