BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0704.p (196 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum 157 1e-38 CC0758 Non COG 140 1e-33 AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaci... 135 5e-32 SMa1227 [T] COG4566 Response regulator Sme Sinorhizobium meliloti 135 6e-32 mll6606 [T] COG4566 Response regulator Mlo Mesorhizobium loti 132 6e-31 >RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum Length = 210 Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/199 (44%), Positives = 125/199 (62%), Gaps = 14/199 (7%) Query: 2 LHIVDDEEIIRDSLTWLARSRNIAATGYDSGMALMSALSAASGIDAEGECLLLDVRMPGN 61 + +VDD+E +RDSLTWL Y S + G+ CL+LDVRM G Sbjct: 15 VFVVDDDEAMRDSLTWLLEGNGYNVRTYRSAEEFLVDDKRGEGVG----CLILDVRMQGM 70 Query: 62 SGVALFNELKNRGLL--HRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVL 119 SG EL++R L +R P++F+TGHGDVPMAV +K GA DF EKPF++++L + V Sbjct: 71 SG----PELQDRLLAENNRMPIVFVTGHGDVPMAVSTMKKGAVDFIEKPFDESELRELVE 126 Query: 120 QALESSR----AGSAEDAVQGRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVH 175 + L +R A + A L+ L+ RE++VL+ I+AG++NK IAD+LGIS++TVE H Sbjct: 127 RMLSKARTEDSAAREQKAANDLLSRLTTREQQVLERIVAGRLNKQIADDLGISIKTVEAH 186 Query: 176 RAHIFDKMNVKTAVELARL 194 RA+I +K+NV T +L RL Sbjct: 187 RANIMEKLNVNTVADLLRL 205 >CC0758 Non COG Length = 202 Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 10/197 (5%) Query: 1 MLHIVDDEEIIRDSLTWLARSRNIAATGYDSGMALMSALSAASGIDAEGECLLLDVRMPG 60 ++H+VDD+E R+SL +L S + Y S A + AL A ++ DVRMP Sbjct: 6 VVHVVDDDESARESLAFLLESADFEVVAYASAPAFLDALP-----QARPGVVITDVRMPE 60 Query: 61 NSGVALFNELKNRGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLQ 120 SG L L L + P++ +TGHGD+PMAV+ +++G DF EKPF++++++D + + Sbjct: 61 MSGQDLVARLS--ALKVKMPIVMITGHGDIPMAVEAMRSGVIDFLEKPFSESRMLDALKR 118 Query: 121 ALESSRAGSAED---AVQGRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHRA 177 A + A D + R+ +LS RER+VLD ++AG NKVIA +LGIS RTVE++RA Sbjct: 119 AFATVEAAPVSDDQAVILKRIESLSERERQVLDGVVAGHANKVIARDLGISPRTVEIYRA 178 Query: 178 HIFDKMNVKTAVELARL 194 + KM L R+ Sbjct: 179 KLMTKMQADNLAALVRM 195 >AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 218 Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 120/197 (60%), Gaps = 11/197 (5%) Query: 1 MLHIVDDEEIIRDSLTWLARSRNIAATGYDSGMALMSALSAASGIDAEGECLLLDVRMPG 60 ++ IVDD+ +R++LT L RS A +DS A + + ++ G CLLLDVR+PG Sbjct: 15 VVFIVDDDVSMREALTDLFRSMKFDAEAFDSAAAFLEK----ANLNRHG-CLLLDVRLPG 69 Query: 61 NSGVALFNELKNRGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLQ 120 SG+ +L+ G +R P+IF+TG GD+PM+V +K GA DF KPF + ++D V Sbjct: 70 ISGLDFQVQLERVG--NRMPIIFMTGFGDIPMSVRAMKAGAVDFLTKPFKEQDILDAVAA 127 Query: 121 ALE---SSRAGSAE-DAVQGRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHR 176 A+E S R SA+ +AV L+ REREV+ ++ G MNK IA ELGIS TV++HR Sbjct: 128 AMERDASRRRESAQNEAVTSLAGQLTPREREVMGAVVRGLMNKQIAYELGISEVTVKLHR 187 Query: 177 AHIFDKMNVKTAVELAR 193 ++ KM ++ +L R Sbjct: 188 GNVMRKMEARSVADLVR 204 >SMa1227 [T] COG4566 Response regulator Sme Sinorhizobium meliloti Length = 204 Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 87/198 (43%), Positives = 115/198 (58%), Gaps = 13/198 (6%) Query: 2 LHIVDDEEIIRDSLTWLARSRNIAATGYDSGMALMSALSAASGIDAEGECLLLDVRMPGN 61 +HIVDDEE +R SL ++ A + S A + A D L+ D+RMP Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFL-----AFAPDVRNGVLVTDLRMPDM 60 Query: 62 SGVALFNELKNRGLLHRR-PVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLQ 120 SGV L L+N G L P I +TGHGDVPMAV+ +K GA DF EKPF D +++ + + Sbjct: 61 SGVEL---LRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIER 117 Query: 121 ALESSRAGSAE--DA--VQGRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHR 176 A E A A+ DA ++ RL LS RER+VL ++AG NK IA +L IS RTVEVHR Sbjct: 118 ASEHLVAAEADVDDANDIRARLQTLSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHR 177 Query: 177 AHIFDKMNVKTAVELARL 194 A++ KM K+ L R+ Sbjct: 178 ANVMAKMKAKSLPHLVRM 195 >mll6606 [T] COG4566 Response regulator Mlo Mesorhizobium loti Length = 204 Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 80/187 (42%), Positives = 112/187 (59%), Gaps = 11/187 (5%) Query: 12 RDSLTWLARSRNIAATGYDSGMALMSALSAASGIDAEGECLLLDVRMPGNSGVALFNELK 71 R SL +L + + A Y+S A LS A+G EG C++ DVRMPG G+ +L+ Sbjct: 17 RKSLGFLLATADFAVRLYESATAF---LSTATG-KLEG-CIVTDVRMPGIDGIEFLRQLR 71 Query: 72 NRGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLQAL---ESSRAG 128 G H PVI +TGH DV +AV +K GA DF EKPF+D L++ + AL + A Sbjct: 72 ASG--HTIPVIVMTGHADVALAVQAMKEGAADFIEKPFDDEMLIEAIRSALANRNQAHAA 129 Query: 129 SAEDA-VQGRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIFDKMNVKT 187 + A ++ RL+ LS RER+VLD +++G NK IA +LGIS RTVE+HRA++ KM + Sbjct: 130 HPQSADIRDRLSTLSERERQVLDGLVSGLPNKTIAYDLGISPRTVEIHRANVMSKMAAGS 189 Query: 188 AVELARL 194 L R+ Sbjct: 190 LSHLVRM 196