BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0692.p (336 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PM1378 [R] COG4158 Predicted ABC-type sugar transport system, pe... 349 5e-96 YPO3963 [R] COG4158 Predicted ABC-type sugar transport system, p... 334 1e-91 Z5690 [R] COG4158 Predicted ABC-type sugar transport system, per... 324 1e-88 ECs5072 [R] COG4158 Predicted ABC-type sugar transport system, p... 324 1e-88 mll3597 Non COG 315 9e-86 >PM1378 [R] COG4158 Predicted ABC-type sugar transport system, permease component Pmu Pasteurella multocida Length = 323 Score = 349 bits (896), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 181/284 (63%), Positives = 227/284 (79%), Gaps = 2/284 (0%) Query: 52 SNFATTENTMNILRQVAINLVLAAGMTFVILTAGIDLSVGSVLAVSAVLGMQVSLSAA-P 110 NF T N MNI RQ +IN+VLAAGMTFVILT GIDLSVGS+L V+AV+G+ SL+ A Sbjct: 41 PNFMTEANMMNITRQASINIVLAAGMTFVILTGGIDLSVGSILGVTAVIGLVTSLNPALA 100 Query: 111 GWSIPMFIVSGLVMGMVNGAMVAFLNINAFVVTLGTMTAFRGAAYLLADGTTVLNSDIPS 170 +++P+ +++GL MG+ NG +VA+ + F+VTLGT TA RGAAYL+ADGTTV+NS I S Sbjct: 101 EFAVPLALLAGLGMGVFNGLLVAYAGLPPFIVTLGTYTALRGAAYLVADGTTVINSKI-S 159 Query: 171 FEWIGNGDFLRVPWLIWVAVAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGIRVGLVL 230 F WIGNG VPWL+ +A AV+ + W ILR+T LG HIYA+GGNLQAARLTGI+V LVL Sbjct: 160 FSWIGNGYLGSVPWLVIIAFAVIAVCWFILRRTTLGTHIYAVGGNLQAARLTGIKVSLVL 219 Query: 231 LFVYSISGLFSGLAGAMSASRLYGANGNWGSGYELDAIAAVVLGGTSLMGGVGTIWGTVV 290 +FVY+ SGL SGL G MSASRLY ANGN G GYELDAIAAV+LGGTS +GG+GTI GT++ Sbjct: 220 IFVYAASGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLI 279 Query: 291 GALIIGVMNNGLTILGLSSFWQYVAKGAVIVLAVILDKWRQKDA 334 GALII +NNG+T++G+S FWQ V KG VI++AV++DK+R + A Sbjct: 280 GALIIATLNNGMTLMGVSYFWQLVIKGGVIIVAVLIDKYRTRSA 323 >YPO3963 [R] COG4158 Predicted ABC-type sugar transport system, permease component Ype Yersinia pestis Length = 330 Score = 334 bits (857), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 194/338 (57%), Positives = 247/338 (73%), Gaps = 16/338 (4%) Query: 1 MHKNDTGAAVAARSSSSVSQW--LLHRLGMLPVLVVLYLLFYALTIYLSGDGGSNFATTE 58 M + T VA +S + + LL +G+LP+LV++ +F L NF T Sbjct: 1 MTNSGTPQQVAKSASLKKAFFSDLLQTVGILPILVLIVAVFGFLA--------PNFFTES 52 Query: 59 NTMNILRQVAINLVLAAGMTFVILTAGIDLSVGSVLAVSAVLGMQVSLSAAPGW---SIP 115 N +NI RQ +IN+VLAAGMTF+ILT GIDLSVGS+L +AV M VSL PGW SIP Sbjct: 53 NLLNIARQSSINIVLAAGMTFIILTGGIDLSVGSILGTTAVTAMAVSL--MPGWEGLSIP 110 Query: 116 MFIVSGLVMGMVNGAMVAFLNINAFVVTLGTMTAFRGAAYLLADGTTVLNSDIPSFEWIG 175 ++ G +G+ NG +VA+ + F+VTLGT TA RG AYLLADGTT++NS+I +FEWIG Sbjct: 111 AALLMGTGLGLFNGMLVAWAGLPPFIVTLGTYTALRGVAYLLADGTTIINSNI-NFEWIG 169 Query: 176 NGDFLRVPWLIWVAVAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYS 235 N VPWL+ +A+ VV + W ILR+T LG+HIYA+GGN+QAARLTGI+V +VLLFVY Sbjct: 170 NAYLGPVPWLVVIALLVVAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWMVLLFVYG 229 Query: 236 ISGLFSGLAGAMSASRLYGANGNWGSGYELDAIAAVVLGGTSLMGGVGTIWGTVVGALII 295 +SGL SGL G MSASRLY ANGN G GYELDAIAAV+LGGTS +GGVGTI GT+VGALII Sbjct: 230 MSGLLSGLGGVMSASRLYSANGNLGMGYELDAIAAVILGGTSFVGGVGTITGTLVGALII 289 Query: 296 GVMNNGLTILGLSSFWQYVAKGAVIVLAVILDKWRQKD 333 +NNG+T++G+S FWQ V KGAVI++AV++DK+R + Sbjct: 290 ATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTRH 327 >Z5690 [R] COG4158 Predicted ABC-type sugar transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 324 Score = 324 bits (831), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 189/313 (60%), Positives = 243/313 (77%), Gaps = 10/313 (3%) Query: 22 LLHRLGMLPVLVVLYLLFYALTIYLSGDGGSNFATTENTMNILRQVAINLVLAAGMTFVI 81 L+ +G+LP+L+++ +F +T NF T N +NI RQ +IN+VLAAGMTF+I Sbjct: 17 LMQTVGILPILILIVAVFGFIT--------PNFFTESNLLNITRQASINIVLAAGMTFII 68 Query: 82 LTAGIDLSVGSVLAVSAVLGMQVSLSAAPGW-SIPMFIVSGLVMGMVNGAMVAFLNINAF 140 LT GIDLSVGS+L +AV M VSLS SIP ++ GL++G+ NGA+VAF + F Sbjct: 69 LTGGIDLSVGSILGTTAVAAMVVSLSPEFAMLSIPAALMLGLLLGLFNGALVAFAGLPPF 128 Query: 141 VVTLGTMTAFRGAAYLLADGTTVLNSDIPSFEWIGNGDFLRVPWLIWVAVAVVLLSWVIL 200 +VTLGT TA RGAAYLLADGTTV+NS+I +FEWIGN VPWL+ +A+AV+++ W IL Sbjct: 129 IVTLGTYTALRGAAYLLADGTTVINSNI-NFEWIGNNYLGPVPWLVVIALAVIVVCWFIL 187 Query: 201 RKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGLFSGLAGAMSASRLYGANGNWG 260 R+T LG+HIYA+GGN+QAARLTGI+V LVLLFVY +SGL SGL G MSASRLY ANGN G Sbjct: 188 RRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGIMSASRLYSANGNLG 247 Query: 261 SGYELDAIAAVVLGGTSLMGGVGTIWGTVVGALIIGVMNNGLTILGLSSFWQYVAKGAVI 320 GYELDAIAAV+LGGTS +GG+GTI GT+VGALII +NNG+T++G+S FWQ V KGA+I Sbjct: 248 MGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAMI 307 Query: 321 VLAVILDKWRQKD 333 ++AV++DK+R + Sbjct: 308 IIAVLIDKYRTRH 320 >ECs5072 [R] COG4158 Predicted ABC-type sugar transport system, permease component Ecs Escherichia coli O157:H7 Length = 324 Score = 324 bits (831), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 189/313 (60%), Positives = 243/313 (77%), Gaps = 10/313 (3%) Query: 22 LLHRLGMLPVLVVLYLLFYALTIYLSGDGGSNFATTENTMNILRQVAINLVLAAGMTFVI 81 L+ +G+LP+L+++ +F +T NF T N +NI RQ +IN+VLAAGMTF+I Sbjct: 17 LMQTVGILPILILIVAVFGFIT--------PNFFTESNLLNITRQASINIVLAAGMTFII 68 Query: 82 LTAGIDLSVGSVLAVSAVLGMQVSLSAAPGW-SIPMFIVSGLVMGMVNGAMVAFLNINAF 140 LT GIDLSVGS+L +AV M VSLS SIP ++ GL++G+ NGA+VAF + F Sbjct: 69 LTGGIDLSVGSILGTTAVAAMVVSLSPEFAMLSIPAALMLGLLLGLFNGALVAFAGLPPF 128 Query: 141 VVTLGTMTAFRGAAYLLADGTTVLNSDIPSFEWIGNGDFLRVPWLIWVAVAVVLLSWVIL 200 +VTLGT TA RGAAYLLADGTTV+NS+I +FEWIGN VPWL+ +A+AV+++ W IL Sbjct: 129 IVTLGTYTALRGAAYLLADGTTVINSNI-NFEWIGNNYLGPVPWLVVIALAVIVVCWFIL 187 Query: 201 RKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGLFSGLAGAMSASRLYGANGNWG 260 R+T LG+HIYA+GGN+QAARLTGI+V LVLLFVY +SGL SGL G MSASRLY ANGN G Sbjct: 188 RRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGIMSASRLYSANGNLG 247 Query: 261 SGYELDAIAAVVLGGTSLMGGVGTIWGTVVGALIIGVMNNGLTILGLSSFWQYVAKGAVI 320 GYELDAIAAV+LGGTS +GG+GTI GT+VGALII +NNG+T++G+S FWQ V KGA+I Sbjct: 248 MGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAMI 307 Query: 321 VLAVILDKWRQKD 333 ++AV++DK+R + Sbjct: 308 IIAVLIDKYRTRH 320 >mll3597 Non COG Length = 330 Score = 315 bits (807), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 179/333 (53%), Positives = 238/333 (71%), Gaps = 24/333 (7%) Query: 13 RSSSSVSQWLLHR---------LGMLPVLVVLYLLFYALTIYLSGDGGSNFATTENTMNI 63 R+++SV Q + LGMLPVLV+L F + F T N + + Sbjct: 4 RTTTSVDQAAVRSRRLRTAFAALGMLPVLVLLAAGFQFIN--------PRFLTETNLLIV 55 Query: 64 LRQVAINLVLAAGMTFVILTAGIDLSVGSVLAVSAVLGMQVSLSAAPGWS---IPMFIVS 120 +Q +IN+VLAAGMTFVILT GIDLSVGS+LA SA++ + VSL P W +P I+ Sbjct: 56 TQQSSINIVLAAGMTFVILTGGIDLSVGSILAASAMVAVLVSL--VPDWGLLGVPAAILV 113 Query: 121 GLVMGMVNGAMVAFLNINAFVVTLGTMTAFRGAAYLLADGTTVLNSDIPSFEWIGNGDFL 180 GL G+VNG +VA++ + F+VTLG++TA RG A LL TTV NSD+P F++IGNG Sbjct: 114 GLGFGLVNGLLVAYIRLPPFIVTLGSLTAVRGVARLLGQDTTVFNSDLP-FDFIGNGSLF 172 Query: 181 RVPWLIWVAVAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGLF 240 +PWL+ +A++VV+LSW++L++TVLG IYA+GGN +AARLTGI+V LVLLFVY +SGL Sbjct: 173 GIPWLVVIALSVVVLSWLVLKRTVLGAWIYAVGGNAEAARLTGIKVPLVLLFVYGVSGLL 232 Query: 241 SGLAGAMSASRLYGANG-NWGSGYELDAIAAVVLGGTSLMGGVGTIWGTVVGALIIGVMN 299 +GL GAMSA+RLY ANG G YELDAIAAV+LGGTS +GGVG+IWGT++G LII V++ Sbjct: 233 AGLGGAMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIWGTLIGGLIIAVLS 292 Query: 300 NGLTILGLSSFWQYVAKGAVIVLAVILDKWRQK 332 NGL + G+S WQY+ KG VI++AV LD++R + Sbjct: 293 NGLILAGVSDIWQYIIKGLVIIVAVALDRYRLQ 325