BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0651.p (243 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1964 [U] COG0811 Biopolymer transport proteins Rso Ralstonia ... 255 6e-68 XF0010 [U] COG0811 Biopolymer transport proteins Xfa Xylella fas... 175 8e-44 NMB1729 [U] COG0811 Biopolymer transport proteins Nme Neisseria ... 168 1e-41 NMA1984 [U] COG0811 Biopolymer transport proteins NmA Neisseria ... 168 1e-41 PA0198 [U] COG0811 Biopolymer transport proteins Pae Pseudomonas... 140 3e-33 >RSc1964 [U] COG0811 Biopolymer transport proteins Rso Ralstonia solanacearum Length = 243 Score = 255 bits (651), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 135/236 (57%), Positives = 169/236 (71%), Gaps = 2/236 (0%) Query: 7 GLESLWAQGDFVTKGVAVLLLAMSIASWYVIITKAFQLLQFRKASAAAGHQFWDTTSLPD 66 GL LW QGD V +G A+LLL MS+ASW VI+TKA+ L++ + + A +FW + Sbjct: 5 GLSHLWTQGDIVARGTALLLLLMSLASWIVILTKAWDLIRLKSMAQGAEKRFWHSDDFDH 64 Query: 67 GVATLG--QDNPFADVARAGVTAMSHHTAHKGHLHDQLSVSDWVTLSLRQAIDEASGKLQ 124 + TLG +DNPF +A+ G A HH A LHD + +SDW+T SL+ AIDE+ G++Q Sbjct: 65 AMHTLGSPKDNPFYALAQTGREAAQHHRASHPQLHDVMDISDWITRSLKSAIDESVGQMQ 124 Query: 125 TGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTALGLAV 184 +G+AVLASVGSTAPFVGLFGTVWGIYHAL+ IG G +IDKVAGPVGE+LIMTA GLAV Sbjct: 125 SGLAVLASVGSTAPFVGLFGTVWGIYHALIGIGAVGVPTIDKVAGPVGESLIMTAFGLAV 184 Query: 185 AIPATFGYNALVRGNKTTIAKLNKFGFDLHALFVTGARAAGEDGQPNGGKAKLTAV 240 AIPA GYNAL RGNK+ IAKLN+F DLHA FVTGAR + + + +L +V Sbjct: 185 AIPAVLGYNALTRGNKSVIAKLNRFAHDLHAYFVTGARLRPGNARQDDASVRLASV 240 >XF0010 [U] COG0811 Biopolymer transport proteins Xfa Xylella fastidiosa 9a5c Length = 254 Score = 175 bits (444), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 101/229 (44%), Positives = 140/229 (61%), Gaps = 15/229 (6%) Query: 1 MEVSPYGLESLWAQGDFVTKGVAVLLLAMSIASWYVIITKAFQLLQFRKASAAAGHQFWD 60 M SP WA V ++L+ MS SWY + + L+ + A + FW Sbjct: 32 MTASPIEFAVSWA--------VLIILVTMSSLSWYWTVINILRALRLKGAGYLVINAFWK 83 Query: 61 TTSLPDGVATLGQDN---PFADVARAGVTAMSHHTAHKGH----LHDQLSVSDWVTLSLR 113 + + ++ + + + PF+ +A A +HH +G L ++LS+S++V +LR Sbjct: 84 AKNPQEAISAMEKQSASEPFSKIALDAAQAAAHHQRTEGGNAMGLGERLSLSEFVDRALR 143 Query: 114 QAIDEASGKLQTGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGE 173 QA+ S KLQ+GM +LA+VG+TAPFVGL GTVWGIY+AL++IG TG ASID VAGPVGE Sbjct: 144 QAVTRESSKLQSGMTLLATVGATAPFVGLLGTVWGIYNALITIGATGSASIDAVAGPVGE 203 Query: 174 ALIMTALGLAVAIPATFGYNALVRGNKTTIAKLNKFGFDLHALFVTGAR 222 ALIMTA+GL VAIPA F +N + N +TIAK + F DLH F TG+R Sbjct: 204 ALIMTAIGLFVAIPAVFAFNFFSKINSSTIAKFDTFAHDLHDFFATGSR 252 >NMB1729 [U] COG0811 Biopolymer transport proteins Nme Neisseria meningitidis MC58 Length = 220 Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/210 (40%), Positives = 128/210 (60%), Gaps = 2/210 (0%) Query: 7 GLESLWAQGDFVTKGVAVLLLAMSIASWYVIITKAFQLLQFRKASAAAGHQFWDTTSLPD 66 L+ ++ GD V GV VL+L MSI +W +++ + +L + RK +AA DT SL D Sbjct: 2 NLKLVFESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARKGNAAVKRHMRDTLSLND 61 Query: 67 GVATL-GQDNPFADVARAGVTAMSHHTAHKG-HLHDQLSVSDWVTLSLRQAIDEASGKLQ 124 V + D P + +A+ + + ++ ++ L L +++++ + +R ++ + + Sbjct: 62 AVEKVRAVDAPLSKLAQEALQSYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRFD 121 Query: 125 TGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTALGLAV 184 GM LAS+G+TAPF+GLFGTVWGIYHAL++IG +GQ SI VAGP+GEAL+ TA GL V Sbjct: 122 YGMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLFV 181 Query: 185 AIPATFGYNALVRGNKTTIAKLNKFGFDLH 214 AIPA YN L RG K L+ DLH Sbjct: 182 AIPAVLAYNFLNRGTKILTQDLDAMAHDLH 211 >NMA1984 [U] COG0811 Biopolymer transport proteins NmA Neisseria meningitidis Z2491 Length = 220 Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/210 (40%), Positives = 128/210 (60%), Gaps = 2/210 (0%) Query: 7 GLESLWAQGDFVTKGVAVLLLAMSIASWYVIITKAFQLLQFRKASAAAGHQFWDTTSLPD 66 L+ ++ GD V GV VL+L MSI +W +++ + +L + RK +AA DT SL D Sbjct: 2 NLKLVFESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARKGNAAVKRHMRDTLSLND 61 Query: 67 GVATL-GQDNPFADVARAGVTAMSHHTAHKG-HLHDQLSVSDWVTLSLRQAIDEASGKLQ 124 V + D P + +A+ + + ++ ++ L L +++++ + +R ++ + + Sbjct: 62 AVEKVRAVDAPLSKLAQEALQSYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRFD 121 Query: 125 TGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTALGLAV 184 GM LAS+G+TAPF+GLFGTVWGIYHAL++IG +GQ SI VAGP+GEAL+ TA GL V Sbjct: 122 YGMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLFV 181 Query: 185 AIPATFGYNALVRGNKTTIAKLNKFGFDLH 214 AIPA YN L RG K L+ DLH Sbjct: 182 AIPAVLAYNFLNRGTKILTQDLDAMAHDLH 211 >PA0198 [U] COG0811 Biopolymer transport proteins Pae Pseudomonas aeruginosa Length = 239 Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 79/194 (40%), Positives = 110/194 (56%), Gaps = 3/194 (1%) Query: 25 LLLAMSIASWYVIITKAFQLLQFRKASAAAGHQFWDTTSLPDGVATLGQDNPFA--DVAR 82 LL+ S+ +W + + K Q + ++ QFW TSL D QD A VA+ Sbjct: 18 LLVGFSVVTWGLALVKGVQFARQKRQDRQFQKQFWSATSL-DSAGEQAQDKQGAGARVAQ 76 Query: 83 AGVTAMSHHTAHKGHLHDQLSVSDWVTLSLRQAIDEASGKLQTGMAVLASVGSTAPFVGL 142 AG A+ + L ++ D + +LRQ I L++G+AVLAS+GST+PF+GL Sbjct: 77 AGFAAIQVQDNGQPDLAQSINHQDRLERALRQQIQRERRSLESGLAVLASIGSTSPFIGL 136 Query: 143 FGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTALGLAVAIPATFGYNALVRGNKTT 202 FGTVWGI AL I G AS++ VAGP+G ALI T +G+AVA+PA YN +R K T Sbjct: 137 FGTVWGIMEALKGISAAGSASLETVAGPIGSALIATGVGIAVAVPAVLVYNYFLRRLKLT 196 Query: 203 IAKLNKFGFDLHAL 216 A L+ F D ++L Sbjct: 197 AADLDDFAHDFYSL 210