BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0629.p         (144 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0564 Non COG                                                        57   2e-08
NMB1276 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid...    31   0.93 
NMA1482 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid...    31   0.93 
CC1656 [IQR] COG1028 Dehydrogenases with different specificities...    30   1.4  
BH3977 Non COG                                                         29   2.9  

>RSc0564 Non COG
          Length = 146

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 1   MPRNKLIHGSPDEIEAAYYDALARADLEALMDLWADDEEVVCIHPGAQRLVGHAEIRAVW 60
           MPR   +  + ++I  AY +AL R D ++ + LW D++ V  I P  QRL GH ++R   
Sbjct: 1   MPRFARLFEAAEDILDAYREALRRRDADSALKLWLDEDSVSFILPDGQRLHGHEQLRGCL 60

Query: 61  EDILSNGGLHIRPRQLHVTQNMMTAVHSVVEEIEHGSQDQPE--VHVIATNVYLKTTLGW 118
           + ++    + I      V  ++  ++    E +   S+D  E  ++V  T V ++   GW
Sbjct: 61  DALVEKQPVWIECLDQQVHSSLGVSIFEATEALRF-SEDATEASLYVHTTYVLMQNHEGW 119

Query: 119 RMVMHHASVAPGAAPAEAVISGA 141
           R+   H+S A     A ++ S A
Sbjct: 120 RIAHVHSSQAAEERVAASIASVA 142


>NMB1276 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
           Nme Neisseria meningitidis MC58
          Length = 517

 Score = 30.8 bits (68), Expect = 0.93,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 11  PDEIEAAYY--DALARADLEALMDLWADDEEVVCIHPGAQRLVGHAEIRAVWEDILSNGG 68
           P EIE   Y  DA+  A +  + D +AD+E V  +       +G  EIR     +L+N  
Sbjct: 426 PREIEEEIYKLDAVEAAAVIGVKDRYADEEIVAFVQLKEGMDLGENEIRRHLRTVLANFK 485

Query: 69  LHIRPRQLH 77
           +   P+Q+H
Sbjct: 486 I---PKQIH 491


>NMA1482 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
           NmA Neisseria meningitidis Z2491
          Length = 517

 Score = 30.8 bits (68), Expect = 0.93,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 11  PDEIEAAYY--DALARADLEALMDLWADDEEVVCIHPGAQRLVGHAEIRAVWEDILSNGG 68
           P EIE   Y  DA+  A +  + D +AD+E V  +       +G  EIR     +L+N  
Sbjct: 426 PREIEEEIYKLDAVEAAAVIGVKDRYADEEIVAFVQLKEGMDLGENEIRRHLRTVLANFK 485

Query: 69  LHIRPRQLH 77
           +   P+Q+H
Sbjct: 486 I---PKQIH 491


>CC1656 [IQR] COG1028 Dehydrogenases with different specificities (related
           to short-chain alcohol dehydrogenases) Ccr Caulobacter
           vibrioides
          Length = 251

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 3   RNKLIHGSPDEIEAAYYDALA--RADLEALMDLWADDEE-----VVCIHPGAQR 49
           R      S  +   A++ A A  +A LEAL+D++AD+ E       C+ PGA R
Sbjct: 143 RAVFFSSSVAKSRPAFWGAYAATKAALEALVDVYADEMENTTVRAFCVDPGAMR 196


>BH3977 Non COG
          Length = 117

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 54  AEIRAVWEDILSNGGLHIRPRQLHVTQNMMTAVHSVVEEIEHGSQDQPEVHVI 106
           AE RA WE+I SN  LH         +N+M  + S +E +E  S D   V  +
Sbjct: 28  AEYRAAWEEITSNLWLHSD----FTGRNLMPILDSALELLEVASADGQSVEEV 76