BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0618.p (350 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0551 [L] COG0468 RecA/RadA recombinase Rso Ralstonia solanace... 529 e-150 PM1817 [L] COG0468 RecA/RadA recombinase Pmu Pasteurella multocida 503 e-142 BMEI0787 [L] COG0468 RecA/RadA recombinase Bme Brucella melitensis 503 e-142 mlr0030 [L] COG0468 RecA/RadA recombinase Mlo Mesorhizobium loti 500 e-141 VC0543 [L] COG0468 RecA/RadA recombinase Vch Vibrio cholerae 498 e-141 >RSc0551 [L] COG0468 RecA/RadA recombinase Rso Ralstonia solanacearum Length = 352 Score = 529 bits (1362), Expect = e-150, Method: Compositional matrix adjust. Identities = 283/341 (82%), Positives = 307/341 (90%), Gaps = 2/341 (0%) Query: 2 DDKKAANNS-EKSKALAAALAQIEKQFGKGSVMRMEDGVIAEEIQAVSTGSLGLDIALGI 60 D KKAA+ S EK KALAAALAQIEKQFGKGS+M+M D + E +Q VSTGSLGLD+ALG+ Sbjct: 3 DGKKAASMSAEKQKALAAALAQIEKQFGKGSIMKMGDAEV-EPVQVVSTGSLGLDVALGV 61 Query: 61 GGLPRGRVIEIYGPESSGKTTLTLQSIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLND 120 GGLPRGRV+EIYGPESSGKTTLTLQ +AEMQKLGGTCAFIDAEHALDVTYA KLGV + D Sbjct: 62 GGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPD 121 Query: 121 LLISQPDTGEQALEICDALVRSGAVDLIVVDSVAALTPKAEIEGDMGDSLPGLQARLMSQ 180 LLISQPDTGEQALEI DALVRSG+VDLIV+DSVAAL PKAEIEG+MGD+LPGLQARLMSQ Sbjct: 122 LLISQPDTGEQALEIADALVRSGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQ 181 Query: 181 ALRKLTGSINRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS 240 ALRKLTG+I RTN VIFINQIRMKIGVMFG+PETTTGGNALKFYASVRLDIRR GSIK Sbjct: 182 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKK 241 Query: 241 GDEVIGSETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSEHKVVEKSGAWYSY 300 GDEV+G+ETKVKVVKNKVAPPFREA FDILYG G SREGEI+DLG E KVVEKSGAWYSY Sbjct: 242 GDEVVGNETKVKVVKNKVAPPFREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSY 301 Query: 301 NGERIGQGKDNARNYLKEHPELAREIENKVRVALGVPELAA 341 NGERIGQG+DN R +L+E+ ELAREIENKVR LGV + A Sbjct: 302 NGERIGQGRDNCREFLRENAELAREIENKVREHLGVTPMGA 342 >PM1817 [L] COG0468 RecA/RadA recombinase Pmu Pasteurella multocida Length = 354 Score = 503 bits (1296), Expect = e-142, Method: Compositional matrix adjust. Identities = 243/325 (74%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 7 ANNSEKSKALAAALAQIEKQFGKGSVMRMEDGVIAEEIQAVSTGSLGLDIALGIGGLPRG 66 A EK+KALAAAL QIEKQFGKGS+M++ D A +++AVSTGSL LD+ALGIGGLP G Sbjct: 2 ATKEEKNKALAAALGQIEKQFGKGSIMKLGD-TQALDVEAVSTGSLSLDVALGIGGLPMG 60 Query: 67 RVIEIYGPESSGKTTLTLQSIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLNDLLISQP 126 R++EI+GPESSGKTTLTL IA+ QK G TCAFIDAEHALD YA KLGVN+N+LL+SQP Sbjct: 61 RIVEIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAEHALDPIYAAKLGVNVNELLVSQP 120 Query: 127 DTGEQALEICDALVRSGAVDLIVVDSVAALTPKAEIEGDMGDSLPGLQARLMSQALRKLT 186 D GEQALEICDALVRSGAVD+I+VDSVAALTPKAEIEG+MGDS GLQARLMSQALRKLT Sbjct: 121 DNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLT 180 Query: 187 GSINRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKSGDEVIG 246 G I +N V+FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG+IK G+EVIG Sbjct: 181 GQIKNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIG 240 Query: 247 SETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSEHKVVEKSGAWYSYNGERIG 306 +ET+VKVVKNKVA PFR+ F ILYG+G S+ GE+++LG +HK+V+K+GAWY+YNGE+IG Sbjct: 241 NETRVKVVKNKVAAPFRQVDFQILYGQGISKTGELIELGVKHKLVDKAGAWYAYNGEKIG 300 Query: 307 QGKDNARNYLKEHPELAREIENKVR 331 QGK NA +L+EHPE A +E K+R Sbjct: 301 QGKANAMKWLEEHPEEALALETKLR 325 >BMEI0787 [L] COG0468 RecA/RadA recombinase Bme Brucella melitensis Length = 378 Score = 503 bits (1296), Expect = e-142, Method: Compositional matrix adjust. Identities = 245/349 (70%), Positives = 293/349 (83%), Gaps = 10/349 (2%) Query: 8 NNSEKSKALAAALAQIEKQFGKGSVMRMEDGVIAEEIQAVSTGSLGLDIALGIGGLPRGR 67 N+ +K+KAL AAL+QIE+ FGKGS+MR+ EI+ VSTGSL LDIALG+GGLP+GR Sbjct: 29 NSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGR 88 Query: 68 VIEIYGPESSGKTTLTLQSIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLNDLLISQPD 127 ++EIYGPESSGKTTL L +IAE QK GG CAF+DAEHALD YA+KLGV+L +LLISQPD Sbjct: 89 IVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPD 148 Query: 128 TGEQALEICDALVRSGAVDLIVVDSVAALTPKAEIEGDMGDSLPGLQARLMSQALRKLTG 187 TGEQALEI D LVRSGA+D++VVDSVAALTP+AEIEG+MGDSLPGLQARLMSQALRKLTG Sbjct: 149 TGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTG 208 Query: 188 SINRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKSGDEVIGS 247 SI+R+N VIFINQIRMKIGVMFG+PETTTGGNALKFYASVRLDIRR GSIK DEV+G+ Sbjct: 209 SISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGN 268 Query: 248 ETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSEHKVVEKSGAWYSYNGERIGQ 307 +T+VKVVKNK+APPF++ FDI+YG G S+ GE++DLG + VVEKSGAW+SYN +R+GQ Sbjct: 269 QTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQ 328 Query: 308 GKDNARNYLKEHPELAREIENKVRVALGV----------PELAAGGEAE 346 G++NA+ YLK++PE+AREIE +R G+ PE A G AE Sbjct: 329 GRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 377 >mlr0030 [L] COG0468 RecA/RadA recombinase Mlo Mesorhizobium loti Length = 365 Score = 500 bits (1288), Expect = e-141, Method: Compositional matrix adjust. Identities = 237/321 (73%), Positives = 283/321 (88%) Query: 11 EKSKALAAALAQIEKQFGKGSVMRMEDGVIAEEIQAVSTGSLGLDIALGIGGLPRGRVIE 70 +KSKAL AAL+QIE+ FGKGS+MR+ EI+ V TGSLGLDIALG+GGLPRGR+IE Sbjct: 15 DKSKALDAALSQIERAFGKGSIMRLGANEQVVEIETVPTGSLGLDIALGVGGLPRGRIIE 74 Query: 71 IYGPESSGKTTLTLQSIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLNDLLISQPDTGE 130 IYGPESSGKTTL L ++AE QK GG CAF+DAEHALD YA+KLGV+L +LLISQPDTGE Sbjct: 75 IYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 134 Query: 131 QALEICDALVRSGAVDLIVVDSVAALTPKAEIEGDMGDSLPGLQARLMSQALRKLTGSIN 190 QALEICD LVRSGA+D++VVDSVAALTP+AEIEG+MGDSLPGLQARLMSQALRKLT SI+ Sbjct: 135 QALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 194 Query: 191 RTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKSGDEVIGSETK 250 R+NT VIFINQIRMKIGVMFG+PETTTGGNALKFYASVRLDIRR GS+K DEV+G++T+ Sbjct: 195 RSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEVVGNQTR 254 Query: 251 VKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSEHKVVEKSGAWYSYNGERIGQGKD 310 VKVVKNK+APPF+ FDI+YGEG S+ GE++DLG + VVEKSGAW+SYN +R+GQG++ Sbjct: 255 VKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRE 314 Query: 311 NARNYLKEHPELAREIENKVR 331 NA+ +L+++P+ AREIE +R Sbjct: 315 NAKLFLRDNPDTAREIELALR 335 >VC0543 [L] COG0468 RecA/RadA recombinase Vch Vibrio cholerae Length = 412 Score = 498 bits (1282), Expect = e-141, Method: Compositional matrix adjust. Identities = 238/330 (72%), Positives = 288/330 (87%), Gaps = 1/330 (0%) Query: 9 NSEKSKALAAALAQIEKQFGKGSVMRMEDGVIAEEIQAVSTGSLGLDIALGIGGLPRGRV 68 + K KALAAAL QIEKQFGKGS+MR+ D A +++ +STGSL LDIALG GGLP GR+ Sbjct: 60 DENKQKALAAALGQIEKQFGKGSIMRLGDNR-AMDVETISTGSLSLDIALGAGGLPMGRI 118 Query: 69 IEIYGPESSGKTTLTLQSIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLNDLLISQPDT 128 +EI+GPESSGKTTLTL+ IA Q+ G TCAFIDAEHALD YA+KLGVN+++LL+SQPDT Sbjct: 119 VEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDT 178 Query: 129 GEQALEICDALVRSGAVDLIVVDSVAALTPKAEIEGDMGDSLPGLQARLMSQALRKLTGS 188 GEQALEICDAL RSGAVD+IVVDSVAALTPKAEIEG+MGDS GLQAR++SQA+RKLTG+ Sbjct: 179 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGN 238 Query: 189 INRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKSGDEVIGSE 248 + ++N IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG+IK G+EV+G+E Sbjct: 239 LKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE 298 Query: 249 TKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSEHKVVEKSGAWYSYNGERIGQG 308 T++KVVKNK+A PF+EA+ I+YG+G +REGE++DLG +HK+VEKSGAWYSYNG++IGQG Sbjct: 299 TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQG 358 Query: 309 KDNARNYLKEHPELAREIENKVRVALGVPE 338 K NA YLKE+PE+A+ ++ K+R L PE Sbjct: 359 KANAYKYLKENPEIAKTLDKKLREMLLNPE 388