BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0615.p (328 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 405 e-113 PA3445 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 129 7e-30 ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transpor... 125 1e-28 ZycbO [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transpo... 125 2e-28 BS_ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 124 4e-28 >PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Pae Pseudomonas aeruginosa Length = 333 Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust. Identities = 191/292 (65%), Positives = 236/292 (80%) Query: 35 LRLDYAYYSPPSLVLRKFGWLEEDLKAQGTEVKWVLSQGSNRALEYLNSDSIDFGSTAGL 94 +RLDYAYY+P SL LRKFGWLE+ L GT V+WV SQGSNR+LEYLN+ S+DF STAGL Sbjct: 32 IRLDYAYYAPTSLALRKFGWLEKSLDGSGTRVRWVFSQGSNRSLEYLNAGSVDFASTAGL 91 Query: 95 AALLARANGNPVKAVYIYSRPEWTALAVGKDSPVRSISELKGKKIAATKGTDPYLFLLRA 154 AA+LARANG+PV+ VY+ SRPEWTAL V KDSP+RS++ELKG+K+AATKGTDPYLFLLR+ Sbjct: 92 AAVLARANGSPVRTVYVASRPEWTALLVRKDSPIRSLAELKGRKVAATKGTDPYLFLLRS 151 Query: 155 LHENGLKKSDVEIVHLQHADGRAALEQGRVAAWAGLDPHLAASELEAGSRLIYRNVNFNT 214 LH GL K+D+ IVHLQH DGR ALE+G+V AWAGLDPH+AASEL+AGSRL+YRN+ FN+ Sbjct: 152 LHSVGLDKNDLRIVHLQHPDGRVALEKGQVDAWAGLDPHMAASELQAGSRLLYRNLGFNS 211 Query: 215 YGFLNVSDSFAARYPDQVKRVLAAYERARHWIIAHPDETVALLSEESKLSAPVARLQLKR 274 YG LNV + FA R+P +++VLAAYE+ARHW+I HPDE LL+EE+ L VARLQL R Sbjct: 212 YGVLNVREDFAERHPQLIRQVLAAYEQARHWVIGHPDEAAQLLAEEAGLPLEVARLQLSR 271 Query: 275 NDFSHPQIGREHIEALRPAAPILLEEDLVKSSTDLPRTINALIDPSYAQDVV 326 DFS P G E + AL+ AAPIL +E LV+ D+ + ++ LI P +A +VV Sbjct: 272 TDFSQPLPGAEQVAALKAAAPILADERLVRPGVDVQKVVDELIAPQWAAEVV 323 >PA3445 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Pae Pseudomonas aeruginosa Length = 323 Score = 129 bits (325), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 90/273 (32%), Positives = 142/273 (52%), Gaps = 5/273 (1%) Query: 34 TLRLDYAYYSPPSLVLRKF-GWLEEDLKAQGTEVKWVLSQGSNRALEYLNSDSIDFGSTA 92 TLR+ Y Y +LVL K G LE+ L G +V+W G + LE LN SIDFG T Sbjct: 31 TLRIGYQKYG--TLVLLKARGTLEKRLAEDGVKVQWTEFPGGPQLLEGLNVGSIDFGVTG 88 Query: 93 GLAALLARANGNPVKAV-YIYSRPEWTALAVGKDSPVRSISELKGKKIAATKGTDPYLFL 151 + A+A G + V Y P A+ + KDSP+RS++ELKG+K+A KG++ + L Sbjct: 89 ETPPVFAQAAGADLLYVAYEPPAPTSEAILLPKDSPIRSVAELKGRKVALNKGSNVHYLL 148 Query: 152 LRALHENGLKKSDVEIVHLQHADGRAALEQGRVAAWAGLDPHLAASELEAGSRLIYRNVN 211 +RAL + GLK SD++ V+L AD RAA E+ V AW DP+ AA+E + +R++ Sbjct: 149 VRALEQAGLKYSDIQPVYLPPADARAAFERHSVDAWVIWDPYQAAAEKQLSARVLVDGRE 208 Query: 212 F-NTYGFLNVSDSFAARYPDQVKRVLAAYERARHWIIAHPDETVALLSEESKLSAPVARL 270 + + F + ++A R+P + +++ W A+P + ++ L A + Sbjct: 209 LVDNHQFYLATRTYAQRHPQVLDKLVDEIREVGDWSRANPQQVTEQVAPLLGLPADITLT 268 Query: 271 QLKRNDFSHPQIGREHIEALRPAAPILLEEDLV 303 +KR + I +EA + A + L+ Sbjct: 269 AVKRQGYGAQLITPAVVEAQQKIADTFTQLKLI 301 >ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Eco Escherichia coli K12 Length = 333 Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 144/269 (53%), Gaps = 8/269 (2%) Query: 1 MQRRHFLRLAPAALGATLLGSTPLIAGAAQPPKTLRLDYAYYSPPSLVLRKFGWLEEDLK 60 M R+ ++LA A L L + A P+ LR+ Y S ++ + LE+ + Sbjct: 13 MPMRNIIKLALAGL----LSVSTFAVAAESSPEALRIGYQKGSIGMVLAKSHQLLEK--R 66 Query: 61 AQGTEVKWVLSQGSNRALEYLNSDSIDFGSTAGLAALLARANGNPVKAVYIYS-RPEWTA 119 +++ WV + LE LN SID GST + + A+A G + V + +P+ Sbjct: 67 YPESKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEV 126 Query: 120 LAVGKDSPVRSISELKGKKIAATKGTDPYLFLLRALHENGLKKSDVEIVHLQHADGRAAL 179 + V ++SP++++++LKG K+A KG+ + LLRAL + GLK +D++ +L AD RAA Sbjct: 127 ILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAF 186 Query: 180 EQGRVAAWAGLDPHLAASELEAGSRLIYRNVNFNTYG-FLNVSDSFAARYPDQVKRVLAA 238 +QG V AWA DP+ +A+ L+ G R++ + N G F + +A + ++ VLA Sbjct: 187 QQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLAT 246 Query: 239 YERARHWIIAHPDETVALLSEESKLSAPV 267 + A + ++++ALL++ L APV Sbjct: 247 FSEADALTRSQREQSIALLAKTMGLPAPV 275 >ZycbO [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components EcZ Escherichia coli O157:H7 EDL933 Length = 333 Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 144/269 (53%), Gaps = 8/269 (2%) Query: 1 MQRRHFLRLAPAALGATLLGSTPLIAGAAQPPKTLRLDYAYYSPPSLVLRKFGWLEEDLK 60 M R+ ++LA L L + ++ A P+ LR+ Y S +VL K L E Sbjct: 13 MPMRNIIKLALVGL----LSVSTIVVAAESSPEALRIGYQKGSI-GMVLAKSHQLLEKRY 67 Query: 61 AQGTEVKWVLSQGSNRALEYLNSDSIDFGSTAGLAALLARANGNPVKAVYIYS-RPEWTA 119 Q +++ WV + LE LN SID GST + + A+A G + V + +P+ Sbjct: 68 PQ-SKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLLYVGVEPPKPKAEV 126 Query: 120 LAVGKDSPVRSISELKGKKIAATKGTDPYLFLLRALHENGLKKSDVEIVHLQHADGRAAL 179 + V ++SP+++ ++LKG K+A KG+ + LLRAL + GLK +D++ +L AD RAA Sbjct: 127 ILVAENSPIKTAADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAF 186 Query: 180 EQGRVAAWAGLDPHLAASELEAGSRLIYRNVNFNTYG-FLNVSDSFAARYPDQVKRVLAA 238 +QG V AWA DP+ +A+ L+ G R++ + N G F + +A + ++ VLA Sbjct: 187 QQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLAT 246 Query: 239 YERARHWIIAHPDETVALLSEESKLSAPV 267 + A + ++++ALL++ L APV Sbjct: 247 FSEADALTRSQREQSIALLAKTMGLPAPV 275 >BS_ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Bsu Bacillus subtilis Length = 332 Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 3/292 (1%) Query: 26 AGAAQPPKTLRLDYAYYSPPSLVLRKFGWLEEDLKAQGTEVKWVLSQGSNRALEYLNSDS 85 +G + K +R+ P L+ ++ GW E+ + +G +VKWV Q E L +D Sbjct: 24 SGDHKQLKEIRIGIQQSLSPLLIAKEKGWFEDAFEKEGIKVKWVEFQSGPPQFEGLAADK 83 Query: 86 IDFGSTAGLAALLARANGNPVKAVYIYSRP-EWTALAVGKDSPVRSISELKGKKIAATKG 144 +DF + +A G K + + + + V ++S ++ + LKGKKIA KG Sbjct: 84 LDFSQVGNSPVIAGQAAGIDFKEIGLSQDGLKANGILVNQNSGIQDVKGLKGKKIAVAKG 143 Query: 145 TDPYLFLLRALHENGLKKSDVEIVHLQHADGRAALEQGRVAAWAGLDPHLAASELEAGSR 204 + + FL +AL + GL +DV I+ LQ + +A E G V AW+ +P+L+ ++ G++ Sbjct: 144 SSGFDFLYKALDQVGLSANDVTIIQLQPDEAASAFENGSVDAWSIWEPYLSLETMKHGAK 203 Query: 205 LIYRNVNFNTY--GFLNVSDSFAARYPDQVKRVLAAYERARHWIIAHPDETVALLSEESK 262 ++ + + Y GF V F+ +PD+V R L + +A W H DE L S+ Sbjct: 204 ILVNGESTDLYSPGFTLVRTKFSEEHPDEVVRFLKVFNKAVVWQKEHLDEAADLYSDIKD 263 Query: 263 LSAPVARLQLKRNDFSHPQIGREHIEALRPAAPILLEEDLVKSSTDLPRTIN 314 L V LK + + I + ++A + A + D+ ++ Sbjct: 264 LDKKVVENVLKNTEPLNEIISDDIVKAQQETADFQFRTKAIDKKIDVKDVVD 315