BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0577.p         (194 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2639 [O] COG0576 Molecular chaperone GrpE (heat shock protein...   182   4e-46
NMB0561 [O] COG0576 Molecular chaperone GrpE (heat shock protein...   161   9e-40
NMA0744 [O] COG0576 Molecular chaperone GrpE (heat shock protein...   161   9e-40
SMc01142 [O] COG0576 Molecular chaperone GrpE (heat shock protei...   123   2e-28
VC0854 [O] COG0576 Molecular chaperone GrpE (heat shock protein)...   121   9e-28

>RSc2639 [O] COG0576 Molecular chaperone GrpE (heat shock protein) Rso
           Ralstonia solanacearum
          Length = 214

 Score =  182 bits (462), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 96/165 (58%), Positives = 123/165 (74%), Gaps = 4/165 (2%)

Query: 33  EQAAAAAPAEPT---LEEKLAAAEAKAAEMQDAFLRARAEGENIRRRAQEDIAKAHKFAI 89
           E A A A  EP    L  +L AA+ KA +  + + RA AEGENIRRRAQ+D+A+AHKFAI
Sbjct: 51  EAAVAEATIEPDTAELRRQLEAADEKARQNYENWARAVAEGENIRRRAQDDVARAHKFAI 110

Query: 90  EGFAESLLAVKDSLEMALKIENASLESLKEGVDMTLKQLTSAFEKNKLQEVSPQAGEKLD 149
           EGFAE LL V DSL+ AL   +  +  L+EGV++TLKQL +AFEK ++ E++P  GEK D
Sbjct: 111 EGFAEYLLPVMDSLQAALADASGDVAKLREGVELTLKQLNAAFEKGRVTELNP-VGEKFD 169

Query: 150 PMKHQAVSAVPAEQEANTVVAVLQKGYMISERLLRPALVTVAQGK 194
           P +HQA+S VPA+QEANTVV VLQ+GY +++R+LRPALVTVA  K
Sbjct: 170 PHRHQAISMVPADQEANTVVNVLQRGYTLADRVLRPALVTVAAPK 214


>NMB0561 [O] COG0576 Molecular chaperone GrpE (heat shock protein) Nme
           Neisseria meningitidis MC58
          Length = 192

 Score =  161 bits (407), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 120/167 (71%), Gaps = 3/167 (1%)

Query: 26  TGAANAAEQAAAAAPAEPTLEEKLAAAEAKAAEMQDAFLRARAEGENIRRRAQEDIAKAH 85
            G A+  ++ AAA PA   L+ ++A  EA   +++D  LRA A  +N+RRR Q++IA  H
Sbjct: 26  VGNADGVQEQAAAEPAYEDLQARIAELEA---QLKDEQLRALANEQNLRRRHQQEIADTH 82

Query: 86  KFAIEGFAESLLAVKDSLEMALKIENASLESLKEGVDMTLKQLTSAFEKNKLQEVSPQAG 145
           KFA + FA  +L VKD LEMAL  ++ + ++LK GV MTL +L  AF+  +++E++P+AG
Sbjct: 83  KFAGQKFAVEMLPVKDYLEMALLDQSGNFDALKMGVQMTLNELQKAFDATQIKEINPKAG 142

Query: 146 EKLDPMKHQAVSAVPAEQEANTVVAVLQKGYMISERLLRPALVTVAQ 192
           +KLDP  HQA+ AV +EQE NTVV V++KGY +S+R+LRPA+VTVAQ
Sbjct: 143 DKLDPNIHQAMQAVASEQEPNTVVGVMKKGYTLSDRVLRPAMVTVAQ 189


>NMA0744 [O] COG0576 Molecular chaperone GrpE (heat shock protein) NmA
           Neisseria meningitidis Z2491
          Length = 192

 Score =  161 bits (407), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 120/167 (71%), Gaps = 3/167 (1%)

Query: 26  TGAANAAEQAAAAAPAEPTLEEKLAAAEAKAAEMQDAFLRARAEGENIRRRAQEDIAKAH 85
            G A+  ++ AAA PA   L+ ++A  EA   +++D  LRA A  +N+RRR Q++IA  H
Sbjct: 26  VGNADGVQEQAAAEPAYEDLQARIAELEA---QLKDEQLRALANEQNLRRRHQQEIADTH 82

Query: 86  KFAIEGFAESLLAVKDSLEMALKIENASLESLKEGVDMTLKQLTSAFEKNKLQEVSPQAG 145
           KFA + FA  +L VKD LEMAL  ++ + ++LK GV MTL +L  AF+  +++E++P+AG
Sbjct: 83  KFAGQKFAVEMLPVKDYLEMALLDQSGNFDALKMGVQMTLNELQKAFDATQIKEINPKAG 142

Query: 146 EKLDPMKHQAVSAVPAEQEANTVVAVLQKGYMISERLLRPALVTVAQ 192
           +KLDP  HQA+ AV +EQE NTVV V++KGY +S+R+LRPA+VTVAQ
Sbjct: 143 DKLDPNIHQAMQAVASEQEPNTVVGVMKKGYTLSDRVLRPAMVTVAQ 189


>SMc01142 [O] COG0576 Molecular chaperone GrpE (heat shock protein) Sme
           Sinorhizobium meliloti
          Length = 208

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/175 (42%), Positives = 109/175 (62%), Gaps = 13/175 (7%)

Query: 31  AAEQAAAAAP---AEPTLEEKLAAAEAKAAEMQDAFLRARAEGENIRRRAQEDIAKAHKF 87
           AAE  AA  P   A  T  + L  A A++AE++D +LR  AE +N+RRR + D+  A  +
Sbjct: 21  AAEPQAAEKPEADASTTAPDPLELARAESAELRDKYLRLAAEMDNLRRRTERDVKDAKSY 80

Query: 88  AIEGFAESLLAVKDSLEMAL--------KIENASLESLKEGVDMTLKQLTSAFEKNKLQE 139
           ++ GFA  +LAV D+L  AL        +  +A L++L EGV+MT + + +A E++ +++
Sbjct: 81  SVAGFARDMLAVSDNLRRALDAIPADAREAGDAGLKALIEGVEMTERSMLAALERHGVKQ 140

Query: 140 VSPQAGEKLDPMKHQAVSAVP-AEQEANTVVAVLQKGYMISERLLRPALVTVAQG 193
           + P  G+K DP  HQA+  VP  E   NTVV V+Q GY I ER+LRPA+V VA+G
Sbjct: 141 LDP-TGQKFDPNFHQAMFEVPNTEVPNNTVVQVVQAGYTIGERVLRPAMVGVAKG 194


>VC0854 [O] COG0576 Molecular chaperone GrpE (heat shock protein) Vch
           Vibrio cholerae
          Length = 200

 Score =  121 bits (304), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 101/152 (66%), Gaps = 5/152 (3%)

Query: 45  LEEKLAAAEAKAAEMQDAFLRARAEGENIRRRAQEDIAKAHKFAIEGFAESLLAVKDSLE 104
           LE  L  +E +  E QD+ LRARAE EN+RRR+++++ KA KFA+  FAE LL V D+LE
Sbjct: 50  LEAALLVSEERVKEQQDSVLRARAEVENMRRRSEQEVDKARKFALSRFAEELLPVIDNLE 109

Query: 105 MALKIENASLESLK---EGVDMTLKQLTSAFEKNKLQEVSPQAGEKLDPMKHQAVSAV-P 160
            A++  +  +E++K   EGV++T K       K  L+E++P  GE  +P  HQA+S    
Sbjct: 110 RAIQAADGEVEAIKPLLEGVELTHKTFVDTIAKFGLKEINPH-GEVFNPEFHQAMSIQES 168

Query: 161 AEQEANTVVAVLQKGYMISERLLRPALVTVAQ 192
           AE E NTV+ V+QKGY ++ R+LRPA+V V++
Sbjct: 169 AEHEPNTVMFVMQKGYELNGRVLRPAMVMVSK 200