BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0543.p         (196 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BBM38 Non COG                                                          36   0.057
PA4489 [R] COG2373 Large extracellular alpha-helical protein Pae...    32   0.66 
sll0321 Non COG                                                        32   0.72 
BS_wapA [M] COG3209 Rhs family protein Bsu Bacillus subtilis           30   3.0  
lin0454 [M] COG3209 Rhs family protein Lin Listeria innocua            30   3.4  

>BBM38 Non COG
          Length = 256

 Score = 35.8 bits (81), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 5/94 (5%)

Query: 95  GIIIAPGTWLTGSGQRKS-DSDIDIWVKAINKPVDTRKS-FFGKFREPDVYFPVFNADYN 152
            +I++   + +G   +KS + D+   VK     +DT+K  FFG F++P+      + +  
Sbjct: 17  ALIVSCKNYASGEDVKKSLEQDLKGKVKGF---LDTKKEEFFGDFKKPEAKVQPKDEESM 73

Query: 153 RWREKHQRGEDFMVYSKPVYLKLKKPITFKLGEI 186
           +  E  ++GED +V       KLK+ I  K+ E+
Sbjct: 74  QADEPQEQGEDQVVQGVAEDQKLKEEIEQKIKEL 107


>PA4489 [R] COG2373 Large extracellular alpha-helical protein Pae
           Pseudomonas aeruginosa
          Length = 1516

 Score = 32.3 bits (72), Expect = 0.66,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 19/85 (22%)

Query: 110 RKSDSDIDIWVKAINKPVDTRKSFFGKFREPDVYFPVFNADYNRWR-------EKHQRGE 162
           R+ D D   W   +      + SF   FR PD           RWR       +  Q G+
Sbjct: 851 RREDVDTAAWQPELVTDAQGKASF--SFRMPD--------SLTRWRITARAIDDNGQVGQ 900

Query: 163 --DFMVYSKPVYLKLKKPITFKLGE 185
              F+   KP+YLK   P  F+ G+
Sbjct: 901 KKQFLRSEKPLYLKWSGPTRFRQGD 925


>sll0321 Non COG
          Length = 498

 Score = 32.3 bits (72), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 3   FHVDWQFQLVSIRDGDTFDGLTLTDLTGSLANFNIYIAVGNVEISGEKYFRYEKSKNFY 61
           +H +  FQ  +I D   F   ++   +G ++N N Y+A G +E+  +   RY   +N Y
Sbjct: 336 YHFNHFFQRANIPDSSEFLNYSMLANSGYVSNENDYLASGEIELLLDTAARYFSEENLY 394


>BS_wapA [M] COG3209 Rhs family protein Bsu Bacillus subtilis
          Length = 2334

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 60   FYCVDPIGKITHVYAYVKD----NYSFNGEQYLGHWNKHGIIIA 99
             Y  D    +T  Y Y       +Y+ NG++Y  H+N HG IIA
Sbjct: 2047 LYETDADNNVTKSYTYGDSGQLLSYTENGKKYFYHYNAHGDIIA 2090


>lin0454 [M] COG3209 Rhs family protein Lin Listeria innocua
          Length = 2167

 Score = 30.0 bits (66), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 60   FYCVDPIGKITHVYAYVKDN----YSFNGEQYLGHWNKHGIIIA 99
             Y  D  GK+   Y Y  DN       NG+    H+N HG +IA
Sbjct: 1921 LYETDGDGKVVRQYVYSDDNVRLAMKMNGKTLYYHYNAHGDVIA 1964