BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0536.p (522 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 356 8e-98 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 349 1e-95 RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 342 1e-93 RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 317 4e-86 RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 313 8e-85 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 356 bits (913), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 202/309 (65%), Positives = 253/309 (81%) Query: 209 TRGLLRQLGGEPAYAMAIAQQIAHGDLAVEVSTRADDRSSLLYAIRMMRDSLAAIVGQVR 268 RGL R LGG+PAYA +A +IA GDL+VE++TR DDR SLLYA+ MR +L +G++R Sbjct: 215 NRGLQRALGGDPAYAAEVANRIAGGDLSVEIATRPDDRDSLLYAMGRMRGALVQTIGRIR 274 Query: 269 QGTDSIERASTEIASGNVDLSARTERQASSLEETASAMEEITSAVRHNAENAAQASELAE 328 +++I A+ EIASGN+DLS+RTE+QASSLEETASAMEE+ S V+ NA+NA QA++LA Sbjct: 275 GASETIGTATREIASGNLDLSSRTEQQASSLEETASAMEELMSTVQQNADNANQANQLAV 334 Query: 329 SASVIAVKGGQLMGEVVATMDDINQSSIKVVDIISVIDGIAFQTNILALNAAVEAARAGE 388 SAS +AV+GG ++ VV TM IN SS K+VDII VIDGIAFQTNILALNAAVEAARAGE Sbjct: 335 SASDVAVRGGDVVSRVVETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGE 394 Query: 389 GGRGFAVVASEVRTLAQRSAAAAKEIKELISASVTKVEAGSSLVKGAGVTMEEIVASVRK 448 GRGFAVVA EVR+LAQRSAAAAKEIK LI SVT V+AGS+LV+ AG TM EIVASVR+ Sbjct: 395 QGRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRR 454 Query: 449 VTGVIADITVSSREQSAGIEQVNDAITHMDEATQQNSALVEQAAAAAQALTSQAGSLARL 508 VT ++ +IT +S+EQ +GIE+V+ A+T +D+ATQQN+ALVEQAAAAAQ+L QA SL ++ Sbjct: 455 VTDIVGEITAASQEQRSGIEEVSHAVTQLDDATQQNAALVEQAAAAAQSLQEQADSLTQV 514 Query: 509 VSTFKVAPT 517 V+ F++ PT Sbjct: 515 VAQFRLDPT 523 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 349 bits (895), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 242/542 (44%), Positives = 332/542 (61%), Gaps = 64/542 (11%) Query: 5 AEMRIGMKLSLGFASLLLMTLALVAVAILGINSLRSSIERANDVQNEKLEPLYAAREALD 64 ++MRIG++L FA L+ L+ +A +GI L D N K+ + + R +L Sbjct: 4 SDMRIGVRLGAAFA---LVVALLIGIAAVGIQRL--------DDNNTKMGQIVSERYSLI 52 Query: 65 QTGIAARNAYVFLEDVDARKELKIVDEQKAIYLAELQ-----------KLEPLLADN--- 110 +N + + L EQK Y+++ +LE LL + Sbjct: 53 ALSNQIKNNGYKANGILSNLLLVTTPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGK 112 Query: 111 ----PNFSA-------VRGGL-LQMADELRLPRQYRQSGAMEAYRDFLVNRCSPLRRKIV 158 F A VR L AD ++ R Q G M +D R L K+V Sbjct: 113 ALFKEQFDARSAYGASVRKFFALVDADNVQEARALYQ-GDMSRLQD----RYYVLVDKMV 167 Query: 159 E----DINQLIAEIAGQSKGAGAASESAAKDALHLISLLAVVVTLLAVTVAFIITRGLLR 214 + ++ ++E A Q GA A + +I +LAV+ TLLA+ ITR + R Sbjct: 168 DHQAGEMEHDVSEAAAQ--GANAK--------IQMI-VLAVLATLLAIATGAFITRTITR 216 Query: 215 QLGGEPAYAMAIAQQIAHGDLA--VEVSTRADDRSSLLYAIRMMRDSLAAIVGQVRQGTD 272 + +AM +A+ +A G+L +EV T+ D+ LL A++ M ++L IV QVR GTD Sbjct: 217 PIN----HAMHLAEAVAQGNLTHLLEVDTQ-DEIGRLLAALKHMIENLHGIVSQVRGGTD 271 Query: 273 SIERASTEIASGNVDLSARTERQASSLEETASAMEEITSAVRHNAENAAQASELAESASV 332 +I RAS+E+ASGN+DLS+RTE+QASSLEETA+AME++TS V+ NA+NA +AS LA +AS+ Sbjct: 272 TITRASSEVASGNIDLSSRTEQQASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASM 331 Query: 333 IAVKGGQLMGEVVATMDDINQSSIKVVDIISVIDGIAFQTNILALNAAVEAARAGEGGRG 392 +A KGG + E + TM IN SS K+VDII VIDGIAFQTNILALNAAVEAARAGE GRG Sbjct: 332 VATKGGDAVDEAIQTMSTINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 391 Query: 393 FAVVASEVRTLAQRSAAAAKEIKELISASVTKVEAGSSLVKGAGVTMEEIVASVRKVTGV 452 FAVVA EVR+LAQRSAAAAKEIK LI SV V G++ V+ AG + ++VA ++ VT + Sbjct: 392 FAVVAGEVRSLAQRSAAAAKEIKALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNI 451 Query: 453 IADITVSSREQSAGIEQVNDAITHMDEATQQNSALVEQAAAAAQALTSQAGSLARLVSTF 512 +++I+ SSREQS GIEQ+N+AIT MD+ATQ+N++LVE++A AAQAL QA LA +VSTF Sbjct: 452 VSEISASSREQSDGIEQINEAITQMDKATQENASLVEESATAAQALQDQANQLADMVSTF 511 Query: 513 KV 514 K+ Sbjct: 512 KL 513 >RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 342 bits (878), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 198/324 (61%), Positives = 251/324 (77%), Gaps = 1/324 (0%) Query: 191 SLLAVVVTLLAVTVA-FIITRGLLRQLGGEPAYAMAIAQQIAHGDLAVEVSTRADDRSSL 249 +L+A++V AVT+A F+I R + R LGGEPAYA IA++IA GDLAV V TR DDR+S+ Sbjct: 190 NLIAILVVGGAVTLAMFLIIRNVQRGLGGEPAYATEIARRIADGDLAVRVQTRPDDRNSM 249 Query: 250 LYAIRMMRDSLAAIVGQVRQGTDSIERASTEIASGNVDLSARTERQASSLEETASAMEEI 309 L+A+ M+ L +G ++ DSI A+ +IA+GN DLS RTE QASSLEETAS+MEE+ Sbjct: 250 LFAMARMQQQLTGTIGHIKTSADSIASATQQIATGNADLSQRTEEQASSLEETASSMEEL 309 Query: 310 TSAVRHNAENAAQASELAESASVIAVKGGQLMGEVVATMDDINQSSIKVVDIISVIDGIA 369 TS V+ NA+NA QAS LA +AS IAVKGG+++G VV TM IN SS K+ DII VI+GIA Sbjct: 310 TSIVKQNADNARQASTLAVNASDIAVKGGEVVGRVVDTMAGINDSSKKIADIIGVIEGIA 369 Query: 370 FQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISASVTKVEAGS 429 FQTNILALNAAVEAARAGE GRGFAVVA EVR+LAQRSA AAKEIK LIS SV +VE G+ Sbjct: 370 FQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKVLISDSVGRVENGT 429 Query: 430 SLVKGAGVTMEEIVASVRKVTGVIADITVSSREQSAGIEQVNDAITHMDEATQQNSALVE 489 +LV AG ++E+V +V++VT ++ +I+ +S EQS+GIEQVN A+ MDE TQQN+ALVE Sbjct: 430 TLVAEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQNAALVE 489 Query: 490 QAAAAAQALTSQAGSLARLVSTFK 513 +AAAAA +L QA L V++F+ Sbjct: 490 EAAAAALSLEEQATLLRDAVASFR 513 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 317 bits (813), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 171/299 (57%), Positives = 229/299 (76%) Query: 217 GGEPAYAMAIAQQIAHGDLAVEVSTRADDRSSLLYAIRMMRDSLAAIVGQVRQGTDSIER 276 GGEP+ A +A GDL+ ++ ADDR+SLL ++ M+ SL+ IV VR +S+ Sbjct: 216 GGEPSVAAQAVSAMAQGDLSRVIAVDADDRTSLLAKLKEMQASLSGIVATVRNNAESVAT 275 Query: 277 ASTEIASGNVDLSARTERQASSLEETASAMEEITSAVRHNAENAAQASELAESASVIAVK 336 AS +IA GN DLS RTE+QAS+L+ET++ M+E+ S V +NAENA QA++LA AS +A + Sbjct: 276 ASAQIAQGNQDLSHRTEQQASALQETSATMDELGSTVGNNAENARQANQLASGASSVAAE 335 Query: 337 GGQLMGEVVATMDDINQSSIKVVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVV 396 GG+++ +VV M IN S K+ DII VIDGIAFQTNILALNAAVEAARAGE GRGFAVV Sbjct: 336 GGEVVSQVVGMMKGINDGSKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 395 Query: 397 ASEVRTLAQRSAAAAKEIKELISASVTKVEAGSSLVKGAGVTMEEIVASVRKVTGVIADI 456 A+EVR+LAQRSAAAAKEIK LI++SV +VE G++LV AG TME+IV ++++V+ ++A+I Sbjct: 396 AAEVRSLAQRSAAAAKEIKALITSSVEQVEQGTTLVDRAGATMEQIVGAIQRVSNIVAEI 455 Query: 457 TVSSREQSAGIEQVNDAITHMDEATQQNSALVEQAAAAAQALTSQAGSLARLVSTFKVA 515 + +S EQS+G+ QV A++ MDEATQQN+ALVEQ+AAAA +L QA L + V+ FK+A Sbjct: 456 SSASAEQSSGVSQVGQAVSQMDEATQQNAALVEQSAAAASSLQGQAQQLVQAVAVFKLA 514 >RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 313 bits (801), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 186/307 (60%), Positives = 235/307 (76%) Query: 208 ITRGLLRQLGGEPAYAMAIAQQIAHGDLAVEVSTRADDRSSLLYAIRMMRDSLAAIVGQV 267 + RGL RQLGG+PAYA IA +IA GDLA+ V TR DR S+L+A+ M+ L + + Sbjct: 207 LARGLQRQLGGDPAYAADIAARIAAGDLAMRVETRPGDRDSVLFAMAQMQRELTGTISHI 266 Query: 268 RQGTDSIERASTEIASGNVDLSARTERQASSLEETASAMEEITSAVRHNAENAAQASELA 327 + DSI A+ +IA+GN DLS RTE+QASSLEETAS+MEE+TS V+ NA+NA QAS LA Sbjct: 267 KHSADSIASATQQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQASTLA 326 Query: 328 ESASVIAVKGGQLMGEVVATMDDINQSSIKVVDIISVIDGIAFQTNILALNAAVEAARAG 387 +AS +AVKGG+++G VV TM IN SS K+ DII VI+GIAFQTNILALNAAVEAARAG Sbjct: 327 VNASDVAVKGGEVVGRVVETMAGINDSSKKIADIIGVIEGIAFQTNILALNAAVEAARAG 386 Query: 388 EGGRGFAVVASEVRTLAQRSAAAAKEIKELISASVTKVEAGSSLVKGAGVTMEEIVASVR 447 E GRGFAVVA EVR+LAQRSA AAKEIKELI SV +V G++LV+ AG ++E+V +V+ Sbjct: 387 EQGRGFAVVAGEVRSLAQRSAGAAKEIKELIGDSVGRVRNGTALVEEAGAVIDEVVVAVK 446 Query: 448 KVTGVIADITVSSREQSAGIEQVNDAITHMDEATQQNSALVEQAAAAAQALTSQAGSLAR 507 +VT ++ +I+ +S EQS+GIEQVN A+ MD+ TQQN+ALVEQAAAAA +L QA L Sbjct: 447 RVTDIMGEISAASAEQSSGIEQVNQAVNQMDQVTQQNAALVEQAAAAALSLEEQAQVLRT 506 Query: 508 LVSTFKV 514 V F++ Sbjct: 507 AVGRFQM 513