BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0533.p         (70 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

alr1718 [R] COG3729 General stress protein Nos Nostoc sp. PCC 7120     87   1e-17
CC1178 Non COG                                                         40   0.001
STM1728 [R] COG3729 General stress protein Sty Salmonella typhim...    28   3.6  
YGL167c [P] COG0474 Cation transport ATPase Sce Saccharomyces ce...    28   5.3  
Z1924 [R] COG3729 General stress protein EcZ Escherichia coli O1...    28   7.7  

>alr1718 [R] COG3729 General stress protein Nos Nostoc sp. PCC 7120
          Length = 122

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 46/48 (95%)

Query: 9  TSNRGFASMDENKQREIASQGGKAAHEKGTAHEFTSEEAREAGRKGGQ 56
          TS RGFASMDE+KQREIAS+GG+AAHEKGTAHEFT EEAREAGRKGG+
Sbjct: 4  TSKRGFASMDEDKQREIASKGGQAAHEKGTAHEFTPEEAREAGRKGGE 51


>CC1178 Non COG
          Length = 77

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 1  MANQNQGSTSNRGFASMDENKQREIASQGGKAAHEKGTAHEFTSEEAREAGRKGGQNSHG 60
          M   ++     RGFA+MD  ++REIA +GG +   +  +     + A  AGRKGG  S G
Sbjct: 10 MDTDSERPRGRRGFAAMDPERRREIARKGGASVPSEKRSFAKDRDLAANAGRKGGSTSRG 69

Query: 61 GNQG 64
             G
Sbjct: 70 ARPG 73


>STM1728 [R] COG3729 General stress protein Sty Salmonella typhimurium LT2
          Length = 60

 Score = 28.5 bits (62), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 23 REIASQGG-KAAHEKGTAHEFTSEEAREAGRKGGQNSHGG 61
          RE AS+ G K     G   +   + A EAG+KGGQNSHGG
Sbjct: 15 REKASEAGRKGGQHSGGNFKNDPQRASEAGKKGGQNSHGG 54


>YGL167c [P] COG0474 Cation transport ATPase Sce Saccharomyces cerevisiae
          Length = 950

 Score = 28.1 bits (61), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 11 NRGFASMDENKQREIASQGGKAAHEKGTAHEFTSEEAREAGRKGGQNSHGG-NQGNSGNN 69
          N      D N++REI     +A  +   + E+ +    EA  K   + +GG    N  NN
Sbjct: 7  NASLLDEDSNREREILDATAEALSKPSPSLEYCTLSVDEALEKLDTDKNGGLRSSNEANN 66

Query: 70 R 70
          R
Sbjct: 67 R 67


>Z1924 [R] COG3729 General stress protein EcZ Escherichia coli O157:H7
          EDL933
          Length = 60

 Score = 27.7 bits (60), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 44 SEEAREAGRKGGQNSHGG 61
           + A EAG+KGGQNSHGG
Sbjct: 37 PQRASEAGKKGGQNSHGG 54