BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0501.p         (275 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3702 [T] COG3706 Response regulator containing a CheY-like rec...   138   2e-32
slr0829_3 [T] COG2199 FOG Syn Synechocystis                           133   4e-31
sll0821_7 [T] COG2199 FOG Syn Synechocystis                           127   2e-29
slr1047_3 [T] COG2199 FOG Syn Synechocystis                           127   4e-29
RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum                  124   2e-28

>PA3702 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Pae Pseudomonas aeruginosa
          Length = 347

 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 117/196 (59%), Gaps = 8/196 (4%)

Query: 82  LEQRDDARSHLEEMEKTLARVGL-------EDALTGLANRRQFERGLLEEFNRAARTNLS 134
           L+QRD+A   L E ++ L    L        D LTGL+NRR F+  L  E+ R+ R    
Sbjct: 143 LQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQ 202

Query: 135 LAIIMIDIDFFDEYNATYGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGS 194
           L+++MID+D+F  YN T+G +AGD+ LR+V  AIR+   R  DL +R+G +E A++LPG+
Sbjct: 203 LSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGT 262

Query: 195 RLEGALIVAERIRKSIEQLNIEHSAS-PSGRVTISIGIAAVAPQRQVDEPDTVLRESEQA 253
              GA ++AE++R+++E L I H    P   +T+SIG++ + P         ++  ++QA
Sbjct: 263 SPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQA 322

Query: 254 LALAKASGRDCIRTTE 269
           L  AK +GR+ +   E
Sbjct: 323 LYQAKNNGRNQVGLME 338


>slr0829_3 [T] COG2199 FOG Syn Synechocystis
          Length = 188

 Score =  133 bits (335), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 115/183 (62%), Gaps = 3/183 (1%)

Query: 92  LEEMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTNLSLAIIMIDIDFFDEYNAT 151
           LE   K L+++   D LT +ANRR F   + +E+ R +R  + +++IM DID F  YN  
Sbjct: 1   LERFNKKLSQLIDIDGLTKIANRRCFNVRIKQEWRRLSRAQVPISLIMFDIDCFKNYNDR 60

Query: 152 YGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIE 211
           YG   GD  L RV  A R    RP DL++RFG +E AVLLP +  +GA++VAE+I ++I 
Sbjct: 61  YGHPEGDLCLIRVAQAARKAASRPADLVARFGGEEFAVLLPETDTKGAIMVAEKIIQAIS 120

Query: 212 QLNIEHSASP-SGRVTISIGIAAVAPQRQVDEPDTVLRESEQALALAKASGRD-CIRTTE 269
           QL I H ASP SG++TIS+GI    P +++    T++++++ AL  AK  GR+  +  TE
Sbjct: 121 QLAIAHEASPISGQITISLGIGTQFPSKELIS-RTLIKQADMALYEAKRRGRNQYVVWTE 179

Query: 270 DLK 272
           +L+
Sbjct: 180 ELE 182


>sll0821_7 [T] COG2199 FOG Syn Synechocystis
          Length = 182

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 99/158 (62%), Gaps = 1/158 (0%)

Query: 106 DALTGLANRRQFERGLLEEFNRAARTNLSLAIIMIDIDFFDEYNATYGRMAGDKVLRRVG 165
           DALT + NR  F+  L  E+ R  R    LA+++ D+DFF  +N  YG  AGD+ L+++ 
Sbjct: 9   DALTQVGNRYLFDSTLEREWQRLQRIREPLALLLCDVDFFKGFNDNYGHPAGDRCLKKIA 68

Query: 166 SAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIEQLNIEHSASPSGRV 225
            A+     RP DL++R+G +E A++L  + LEGA+ V E ++  +  L I H+ S +G V
Sbjct: 69  DAMAKVAKRPTDLVARYGGEEFAIILSETSLEGAINVTEALQVEVANLAIPHTVSGTGHV 128

Query: 226 TISIGIAAVAPQRQVDEPDTVLRESEQALALAKASGRD 263
           T+SIGIA   P+R ++ P+ +++ ++ AL  AKA GR+
Sbjct: 129 TLSIGIAVYTPERHIN-PNALVKAADLALYEAKAKGRN 165


>slr1047_3 [T] COG2199 FOG Syn Synechocystis
          Length = 184

 Score =  127 bits (318), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 100/173 (57%), Gaps = 2/173 (1%)

Query: 92  LEEMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTNLSLAIIMIDIDFFDEYNAT 151
           LE++ + L  + + D LT + NRR F   L +E+ +  R    +++I+ D+D+F  YN  
Sbjct: 1   LEQVNQRLKHLAIYDELTQIPNRRYFTSYLEQEWRQCLRQKSPISLILCDVDYFKNYNDL 60

Query: 152 YGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIE 211
           YG   GDK L+ V   I++   RP D+L+R+G +E  V+LP +   GA  V +RI   + 
Sbjct: 61  YGHQMGDKCLQSVAKVIQNALKRPSDVLARYGGEEFIVILPYTDQSGAYTVGQRIHHCLA 120

Query: 212 QLNIEHSASPSGR-VTISIGIAAVAPQRQVDEPDTVLRESEQALALAKASGRD 263
           +  I H+ SP+ R +TIS+GI    P      P  +++ ++QAL  AKA+GR+
Sbjct: 121 EAQISHADSPTSRYLTISLGIGTTVPLLHY-HPSDLIKIADQALYAAKAAGRN 172


>RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum
          Length = 177

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 3/172 (1%)

Query: 94  EMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTNLSLAIIMIDIDFFDEYNATYG 153
           E ++  A +   DALTGLANRR  +  L  E+ RAAR    L+++MID+D F  YN  YG
Sbjct: 3   EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYG 62

Query: 154 RMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIEQL 213
              GD  L+ V   I+    RP DL +R+G +E  V+LPGS L+ A +VAE IR++I  L
Sbjct: 63  HPDGDAALQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLDSANVVAETIRRAILVL 122

Query: 214 NIEHSASPSGRVTISIGIAAVAPQRQVDEPD--TVLRESEQALALAKASGRD 263
           NI H+ S S  +T+SIG A+  P     EP   T+ + ++  L  AK SGR+
Sbjct: 123 NIPHARSASTALTVSIGAASGTPA-SSGEPRAATLTKAADAQLYRAKTSGRN 173