BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0492.p (955 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VCA0895_2 [T] COG2206 HD-GYP domain Vch Vibrio cholerae 374 e-103 VCA0895_1 [NT] COG0840 Methyl-accepting chemotaxis protein Vch V... 136 2e-31 SMc00339_1 [NT] COG0840 Methyl-accepting chemotaxis protein Sme ... 89 7e-17 VCA0681 [T] COG2206 HD-GYP domain Vch Vibrio cholerae 79 6e-14 CAC2837 [T] COG2206 HD-GYP domain Cac Clostridium acetobutylicum 77 1e-13 >VCA0895_2 [T] COG2206 HD-GYP domain Vch Vibrio cholerae Length = 464 Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust. Identities = 209/455 (45%), Positives = 278/455 (61%), Gaps = 23/455 (5%) Query: 497 LRGRNGSLEGLLVLMHAHDSAHEDPRFLAFAGRLSGMLAVAIETRQLIAAQKALLESLIR 556 L R L G++ L + + AF L +A + I QK +L++ + Sbjct: 18 LLNRERQLVGIVCLGYERTIENVQADKHAFLRELLSFAEIAKDNIDKIQQQKEMLKAFVE 77 Query: 557 LMADAIDAKSPYTGGHCERVPHLAIMLVERLAQEREGRYADFQLNEDQRYAFQLAALLHD 616 L+A AID KSPYTGGHC+RVP L +L E A+++ +A+F ++ +Q LAA LHD Sbjct: 78 LIASAIDTKSPYTGGHCQRVPELTRLLAEAAAKDKR-YFAEFTMSSEQWEELTLAAWLHD 136 Query: 617 CGKVTSPEHIVDKATKLEVIHNRIHEVRMRFEVLWRDAELELLRDYFPALP----PAQAE 672 CGKVT+PE +VDKATKLE I++RIHEVRMRFE+L AE RDY+ + P QAE Sbjct: 137 CGKVTTPEFVVDKATKLETIYDRIHEVRMRFELLKMQAE----RDYWQSCAQGGDPKQAE 192 Query: 673 ALRRRLDQRRAQLREDFAFVAQCNVGGETMSDEAITRLHQIARQTWQRHFDDSLGLAGEE 732 + L Q QL ++FAFVAQCN+G E MSDE I RL QIA++ WQR DD +G++ E Sbjct: 193 QALKALHQ---QLDDEFAFVAQCNLGSEGMSDEDIKRLEQIAQRQWQRTLDDQIGISWVE 249 Query: 733 ARRLAASRDGRPSPSLPHTEQLLADRPEHKVAWDDGHRPAVERGDPRNTLGFDMKLPHYR 792 R AA P+P LP E LLAD+ H++ W G P + F + P + Sbjct: 250 KSRAAA-----PAP-LPVWEPLLADKSVHQIPWPQGKTPQETWQE-----AFCLTPPALQ 298 Query: 793 QNMGELHNLTVRRGTLTEEDRFAINNHIVQTLVMLKSLPWPDSLKSVPDTAANHHEKMDG 852 N GELHNL V+RGTLT EDRF IN+HI+QT++ML+ LP+P L+ VP+ A HHE+MDG Sbjct: 299 YNRGELHNLKVKRGTLTAEDRFMINDHIIQTILMLQRLPYPKHLQGVPEIAGGHHERMDG 358 Query: 853 SGYPRRLRASTLPLQDRVMALADVFEALTAADRPYKPAKTLSESLRIMAAMCRDQHLDTE 912 GYPR + AS L + R+MA+ADVFEALT+ DRPYK AK+L E + IM M H+D + Sbjct: 359 KGYPRGIEASQLSVPARIMAIADVFEALTSNDRPYKKAKSLQECIAIMTDMATSGHIDPK 418 Query: 913 LFRYFLRSRLWQAYADELLRPAQRDEVDIDAIEAL 947 L+ FL+ L Q YA++ L Q +D E + Sbjct: 419 LYLLFLQHNLHQTYAEQFLSVEQYQNSVVDTQEHI 453 >VCA0895_1 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio cholerae Length = 517 Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 108/462 (23%), Positives = 209/462 (45%), Gaps = 17/462 (3%) Query: 7 ISGLVMAGMILLAVVLVSVGWWGARQVLLDMAERSAEDAGRIMTERSRRIIDPAVATLRQ 66 IS L ++ + VL+++ ++ ++Q+L A A + + + + + P + +L Sbjct: 31 ISSLFFILILFIGSVLIAISYYSSQQLLAGSARTLAHENSKKLETVFTQNVAPILTSLDF 90 Query: 67 LSFDPITQATD---LDERLTRIAAFSIDLVANPLVSAVYVGYPNGDFLLVRSLRGAEQRA 123 L+ + T+ D+R + + +N ++++Y G F + R L R Sbjct: 91 LATSRFIEHTEPPLQDQRWLTSVLRAFEQSSN--LNSLYFANETGQFFMFRPLLSRADRV 148 Query: 124 FFVAPPEATFLVQSIVRDAAGQQHGQYRFYNAELKLLALQEQPQYRFDPRTRPWYARADR 183 F AP +A + D + F N E+KL+ ++ + FDPR RPWY A Sbjct: 149 MFAAPDDAVLWMNYSHIDGTNDIY----FLNQEMKLVGQYKEVAHFFDPRVRPWYLNAAN 204 Query: 184 SLTPAISAPYVFFTTRQIGISLSQRARNSDAVVALDMTLDDLAVSLGNLRLTPHSELALV 243 I+ PY+FFT + G++LS+R+ + VV D+TL L+ L L + HS+L L+ Sbjct: 205 DGVIRITEPYLFFTLQTYGLTLSRRSFSGKQVVGADLTLKALSSELSKLGFSDHSQLILL 264 Query: 244 DDADKVIAYSDMGRVLEQEGDNFRFRGLQDLDVPSLSLLAQRSKAGDTRALYQVEGREWL 303 D + +A + G L + + + + L + D P S++++ + + +G++W+ Sbjct: 265 DQQLRPLAEHNSGLNLRSDPEQIK-QSLLNTDTPFASVMSRITSQAQYDTPHS-QGQDWV 322 Query: 304 GLSLPFNVIDGHALKLLITAPGDELLGQLDRNRKTMVLVAFLLVLAFLPLGWWAGRAIGL 363 P + L L P DELL L R + A +L+L P+ W + + Sbjct: 323 TTLTPVKLNQQLHLFLAQATPKDELLADLITLRNRQITSAIVLLLFCFPVVIWVAKRLSS 382 Query: 364 SLERLAQKAARLSRFDFRTQGRGRSTLREVNMLTEMVDHVSLTVEAFLDISAILSTETHV 423 L L Q ++RF+F+ ++ + E L++ + L A D+ +L T+ Sbjct: 383 PLHNLIQLTDNIARFNFKKTRYPQTMITEAANLSQ---SIQLMEHALHDLLRLLRETTNN 439 Query: 424 E---QMLQQVLEKFVQATRCDGGAVYLWQREGQQMQRAAAYG 462 + Q+ + + + T+ + +Y++ +E Q AA + Sbjct: 440 QDFAQLARTIAHQSYAITKAETILLYVYDQENNQFSVAANHA 481 >SMc00339_1 [NT] COG0840 Methyl-accepting chemotaxis protein Sme Sinorhizobium meliloti Length = 305 Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 119/267 (44%), Gaps = 18/267 (6%) Query: 9 GLVMAGM-ILLAVVLVSVGWWGARQVLLDMAERSAED-AGRI------MTERSRRIIDPA 60 GLVM M I+++ LV + + AR + AE + + GR+ ++ + ++ Sbjct: 36 GLVMVAMLIVVSATLVGLDYRRARSAAIAGAEDNMDAFVGRLVDRLGALSGDTSALVSLV 95 Query: 61 VATLRQLSFDPITQATDLDERLTRIAAFSIDLVANPLVSAVYVGYPNGDFLLVRSLRGAE 120 + P + D ++A + +P + VYVGYP+G F V L A Sbjct: 96 ASVANSFLVPPPERMND------KVAVLREGIARSPHIDGVYVGYPSGAFFHVVDLDSAA 149 Query: 121 QRAFFVAPPEATFLVQSIVRDAAGQQHGQYRFYNAELKLLALQEQPQYRFDPRTRPWYAR 180 R AP A V+S+ R+ G+ + F +A A + FDPRTRPWY Sbjct: 150 WRMALDAPRGAAIAVRSMERNDQGKPFDRILFLDASGLQFAERHAASNGFDPRTRPWYRA 209 Query: 181 ADRSLTPAISAPYVFFTTRQIGISLSQRAR-NSDAVVALDMTLDDLAVSLGNLRLTPHSE 239 A P PY TT +G+++SQ R N V+ D+ LD + L RLT S Sbjct: 210 AVNGKAPVAIGPYEMATTGNLGMTISQAHRGNPQIVIGADVVLDTITDFLSRERLTDDSV 269 Query: 240 LALVDDADKVIAYSD---MGRVLEQEG 263 ++D + I +SD M R++ +G Sbjct: 270 SFVLDAVGRPIIHSDSTMMRRIMASKG 296 >VCA0681 [T] COG2206 HD-GYP domain Vch Vibrio cholerae Length = 431 Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 77/131 (58%), Gaps = 7/131 (5%) Query: 793 QNMGELHN---LTVRRGTLTEEDRFAINNHIVQTLVMLKSLPWPDSLKSVPDTAANHHEK 849 ++G+LH + + G L E + I H + L+ + + S+ V + A NHHE+ Sbjct: 288 HDIGKLHTPEEILHKPGKLNESEYLCIQRHSTDSRYTLQ-MVFGQSV--VCEWAGNHHER 344 Query: 850 MDGSGYPRRLRASTLPLQDRVMALADVFEALTAADRPYKPAKTLSESLRIMAAMCRDQHL 909 +DGSGYPR L+ + + L R++A+ADVF+ALT A RPY+ + +L+E + IM L Sbjct: 345 LDGSGYPRGLQGAAIDLPSRIIAIADVFQALTQA-RPYRGSMSLNEVMNIMRHEVSCGRL 403 Query: 910 DTELFRYFLRS 920 D+++F +R+ Sbjct: 404 DSQVFDVIVRN 414 Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 11/81 (13%) Query: 553 SLIRLMADAIDAKSPYTGGHCERVPHLAIMLVERLAQEREGRYADFQLNEDQRYAFQLAA 612 S+ LMA+ +DAKS +T H ++V L L + L LN + + A L Sbjct: 237 SIAMLMANVVDAKSQFTFQHSQKVAELCQHLAKELG-----------LNVEMQKALYLTG 285 Query: 613 LLHDCGKVTSPEHIVDKATKL 633 L+HD GK+ +PE I+ K KL Sbjct: 286 LVHDIGKLHTPEEILHKPGKL 306 >CAC2837 [T] COG2206 HD-GYP domain Cac Clostridium acetobutylicum Length = 417 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 68/109 (62%), Gaps = 10/109 (9%) Query: 804 RRGTLTEEDRFAINNHIVQTLVMLKSLPWPDSLKSVPDT---AANHHEKMDGSGYPRRLR 860 + G+LT+++ I +H+ T ++L DS++ + D A++HHEK++G+GYPR L Sbjct: 294 KNGSLTDDEFSIIKSHVYYTKIIL------DSIEDIHDISYWASSHHEKLNGTGYPRHLT 347 Query: 861 ASTLPLQDRVMALADVFEALTAADRPYKPAKTLSESLRIMAAMCRDQHL 909 AS L + R+M + D+++ALT DRPY+ + E+ +I+ M D ++ Sbjct: 348 ASELSEECRIMGVCDIYQALT-EDRPYRKGLSHEEAFKILNHMTSDGYI 395 Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 11/104 (10%) Query: 816 INNHIVQTLVMLKSLPWPDSLKSVPDTAANHHEKMDGSGYPRRLRASTLPLQDRVMALAD 875 I H +Q + ++LP SV HHE +G+G P +L+ +P++ R++ LAD Sbjct: 96 IKQHCIQGAAITENLPI---FNSVSPIIHYHHENYNGTG-PFKLKYDQIPIESRIIHLAD 151 Query: 876 VFEALTAAD-RPYKPAKTLSESLRIMAAMCRDQHLDTELFRYFL 918 + E L + +K K I+ +C + D E+ + FL Sbjct: 152 MVETLYEENINAFKQHKD------IINLVCENPLFDKEVLKAFL 189 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 11/83 (13%) Query: 551 LESLIRLMADAIDAKSPYTGGHCERVPHLAIMLVERLAQEREGRYADFQLNEDQRYAFQL 610 ES +++D ID+KS +T H + +LA + +Y + E++ ++ Sbjct: 227 FESFAFMISDVIDSKSSFTAKHSRSISNLAFQV---------SKYVGYS--EEKCLKMKI 275 Query: 611 AALLHDCGKVTSPEHIVDKATKL 633 A LLHD GK+ P I+DK L Sbjct: 276 AGLLHDIGKLAIPTSILDKNGSL 298