BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0476.p (214 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0012 [K] COG1309 Transcriptional regulator Rso Ralstonia sola... 216 3e-56 STM0477 [K] COG1309 Transcriptional regulator Sty Salmonella typ... 154 2e-37 ZacrR [K] COG1309 Transcriptional regulator EcZ Escherichia coli... 154 2e-37 ECs0517 [K] COG1309 Transcriptional regulator Ecs Escherichia co... 154 2e-37 acrR [K] COG1309 Transcriptional regulator Eco Escherichia coli K12 153 3e-37 >RSc0012 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum Length = 219 Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 112/216 (51%), Positives = 145/216 (67%), Gaps = 7/216 (3%) Query: 1 MARSTKEEALETRARILDAAEQVFHQRGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR RILDAAE+VF+ RGV++TSL+D+A+AA VTRGAIYWHF+NK+D+F Sbjct: 1 MVRRTKEEALETRNRILDAAEEVFYVRGVARTSLSDIAQAAGVTRGAIYWHFRNKADVFA 60 Query: 61 AMCERVRLPMEAVLEENASP---QLEDPLGQFLRSGIYVLTMAATDERCRRVFDIIFNKC 117 AMCERV+LPME + SP + DPLG+ +VL D RRVF+I+FNKC Sbjct: 61 AMCERVKLPMETL----CSPLGVEPNDPLGELRNVANFVLQQLVEDMHWRRVFEIMFNKC 116 Query: 118 EFADAHDPILIRQRECHVDGLLRLEQILMNAVARGQLPATLDIRLACLAAHATFSGLLTD 177 EF + PIL RQ+E +GL RL I+ A RGQLP LD+ LA HA+F G++ D Sbjct: 117 EFVEDTSPILKRQQESFEEGLARLTHIIGQAARRGQLPPDLDVPLAVAHFHASFGGIMGD 176 Query: 178 WFFSPDSFDLVKDGERILAASLYALKTAPSLQKSAP 213 + F PD+ L ER + A + LK +P+L+ + P Sbjct: 177 YLFYPDASSLAVKRERFVDACIDTLKYSPALRLAQP 212 >STM0477 [K] COG1309 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 217 Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 86/212 (40%), Positives = 121/212 (57%) Query: 1 MARSTKEEALETRARILDAAEQVFHQRGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 MAR TK++ALETR ILD A ++F Q+GVS TSLA++A AA VTRGAIYWHFKNKSDLF Sbjct: 1 MARKTKQQALETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFS 60 Query: 61 AMCERVRLPMEAVLEENASPQLEDPLGQFLRSGIYVLTMAATDERCRRVFDIIFNKCEFA 120 + E + + E + +DPL +++L T+ER R + +IIF+KCEF Sbjct: 61 EIWELSESNIGELEIEYQAKFPDDPLSVLREILVHILEATVTEERRRLLMEIIFHKCEFV 120 Query: 121 DAHDPILIRQRECHVDGLLRLEQILMNAVARGQLPATLDIRLACLAAHATFSGLLTDWFF 180 + QR ++ R+EQ L + + LP L R A + + SGL+ +W F Sbjct: 121 GEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLPENLLTRRAAILMRSFISGLMENWLF 180 Query: 181 SPDSFDLVKDGERILAASLYALKTAPSLQKSA 212 +P SFDL K+ + L + P+L+ S Sbjct: 181 APQSFDLKKEARAYVTILLEMYQLCPTLRAST 212 >ZacrR [K] COG1309 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 215 Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/212 (41%), Positives = 119/212 (56%) Query: 1 MARSTKEEALETRARILDAAEQVFHQRGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 MAR TK+EA ETR ILD A ++F Q+GVS TSL ++AKAA VTRGAIYWHFK+KSDLF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AMCERVRLPMEAVLEENASPQLEDPLGQFLRSGIYVLTMAATDERCRRVFDIIFNKCEFA 120 + E + + E + DPL I+VL T+ER R + +IIF+KCEF Sbjct: 61 EIWELSESNIGELELEYQAKFPSDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 121 DAHDPILIRQRECHVDGLLRLEQILMNAVARGQLPATLDIRLACLAAHATFSGLLTDWFF 180 + QR ++ R+EQ L + + LPA L R A + SGL+ +W F Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 181 SPDSFDLVKDGERILAASLYALKTAPSLQKSA 212 +P SFDL K+ +A L P+L+ A Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLRNPA 212 >ECs0517 [K] COG1309 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 215 Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/212 (41%), Positives = 119/212 (56%) Query: 1 MARSTKEEALETRARILDAAEQVFHQRGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 MAR TK+EA ETR ILD A ++F Q+GVS TSL ++AKAA VTRGAIYWHFK+KSDLF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AMCERVRLPMEAVLEENASPQLEDPLGQFLRSGIYVLTMAATDERCRRVFDIIFNKCEFA 120 + E + + E + DPL I+VL T+ER R + +IIF+KCEF Sbjct: 61 EIWELSESNIGELELEYQAKFPSDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 121 DAHDPILIRQRECHVDGLLRLEQILMNAVARGQLPATLDIRLACLAAHATFSGLLTDWFF 180 + QR ++ R+EQ L + + LPA L R A + SGL+ +W F Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 181 SPDSFDLVKDGERILAASLYALKTAPSLQKSA 212 +P SFDL K+ +A L P+L+ A Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLRNPA 212 >acrR [K] COG1309 Transcriptional regulator Eco Escherichia coli K12 Length = 215 Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 89/212 (41%), Positives = 119/212 (56%) Query: 1 MARSTKEEALETRARILDAAEQVFHQRGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 MAR TK+EA ETR ILD A ++F Q+GVS TSL ++AKAA VTRGAIYWHFK+KSDLF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AMCERVRLPMEAVLEENASPQLEDPLGQFLRSGIYVLTMAATDERCRRVFDIIFNKCEFA 120 + E + + E + DPL I+VL T+ER R + +IIF+KCEF Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 121 DAHDPILIRQRECHVDGLLRLEQILMNAVARGQLPATLDIRLACLAAHATFSGLLTDWFF 180 + QR ++ R+EQ L + + LPA L R A + SGL+ +W F Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 181 SPDSFDLVKDGERILAASLYALKTAPSLQKSA 212 +P SFDL K+ +A L P+L+ A Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLRNPA 212