BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0447.p (193 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0675 [K] COG1678 Putative transcriptional regulator Rso Ralst... 248 4e-66 VC0467 [K] COG1678 Putative transcriptional regulator Vch Vibrio... 197 1e-50 NMB1336 [K] COG1678 Putative transcriptional regulator Nme Neiss... 186 2e-47 NMA1550 [K] COG1678 Putative transcriptional regulator NmA Neiss... 184 9e-47 PA0405 [K] COG1678 Putative transcriptional regulator Pae Pseudo... 180 2e-45 >RSc0675 [K] COG1678 Putative transcriptional regulator Rso Ralstonia solanacearum Length = 190 Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 122/191 (63%), Positives = 144/191 (75%), Gaps = 8/191 (4%) Query: 3 LDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINLKLEI 62 ++LTN FLIAMP M DP F GTVVYLCEHN GALG+VIN+P D+ + LFD+I+LKLEI Sbjct: 8 INLTNQFLIAMPGMADPTFSGTVVYLCEHNERGALGLVINRPIDIDLATLFDKIDLKLEI 67 Query: 63 RPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEAVA 122 P L +PV +GGPVQ ERGFVLH YSS+L V + +TTSKDVLEAVA Sbjct: 68 HP--------LAEQPVYYGGPVQTERGFVLHDAMGSYSSSLTVPGGLEMTTSKDVLEAVA 119 Query: 123 HGDGPERVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPAIIFELPVEQRFTAALALLGID 182 G GP+R ++TLG +GWS GQLE EIGRNGWLTV+ADP IIF +P E+RF AAL LLGI+ Sbjct: 120 RGGGPQRFILTLGYAGWSAGQLEEEIGRNGWLTVQADPEIIFNVPAEERFAAALRLLGIN 179 Query: 183 PVMLSGDAGRA 193 P MLSG+AG A Sbjct: 180 PAMLSGEAGHA 190 >VC0467 [K] COG1678 Putative transcriptional regulator Vch Vibrio cholerae Length = 200 Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 90/191 (47%), Positives = 130/191 (68%), Gaps = 4/191 (2%) Query: 3 LDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINLKLEI 62 ++LTNHFL+AMPSM DP F +V+Y+CEHN +GA+G++IN P D+T+ + ++ +I Sbjct: 14 MNLTNHFLVAMPSMKDPYFKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQV----DI 69 Query: 63 RPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEAVA 122 P P + E ++PV GGPV +RGF+LH + Y S++++TD++A+TTSKD+L + Sbjct: 70 EPAYPQSHQENLKKPVFNGGPVSEDRGFILHRPRDHYESSMKMTDDIAVTTSKDILTVLG 129 Query: 123 HGDGPERVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPAIIFELPVEQRFTAALALLGID 182 PE +V LG SGWS GQLE E+ N WLT++ADP +IF PV +++ A+ LGI Sbjct: 130 TEAEPEGYIVALGYSGWSAGQLEVELTENSWLTIEADPELIFNTPVHEKWQKAIQKLGIS 189 Query: 183 PVMLSGDAGRA 193 P LS DAG A Sbjct: 190 PAQLSSDAGHA 200 >NMB1336 [K] COG1678 Putative transcriptional regulator Nme Neisseria meningitidis MC58 Length = 182 Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 127/191 (66%), Gaps = 9/191 (4%) Query: 3 LDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINLKLEI 62 ++L+NHFLIAMP M D F +VVY+C+H+ +GALG+ INKP+ +TMD++F + + Sbjct: 1 MNLSNHFLIAMPDMEDAFFSQSVVYICKHDEDGALGIAINKPSPITMDMIFSATGKNIPM 60 Query: 63 RPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEAVA 122 R + VM GGPVQVERG+V+H+ + S++ V+D +ALT+S+DV+E ++ Sbjct: 61 R---------MQHDSVMMGGPVQVERGYVVHTPIGNWQSSIGVSDNIALTSSRDVIENIS 111 Query: 123 HGDGPERVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPAIIFELPVEQRFTAALALLGID 182 ++ L+++G S WS GQLE E+ N WLTV AD I+F++P E R+ AA A LGID Sbjct: 112 REGAVDKALISIGYSSWSKGQLERELADNAWLTVPADEHILFDIPYEHRYAAAFAKLGID 171 Query: 183 PVMLSGDAGRA 193 P+ L AG A Sbjct: 172 PLALFSGAGHA 182 >NMA1550 [K] COG1678 Putative transcriptional regulator NmA Neisseria meningitidis Z2491 Length = 182 Score = 184 bits (468), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 126/191 (65%), Gaps = 9/191 (4%) Query: 3 LDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINLKLEI 62 ++L+NHFL+AMP M D F +VVY+C+H+ +GALG+ INKP+ +TMD++F + Sbjct: 1 MNLSNHFLVAMPDMEDAFFSQSVVYICKHDEDGALGIAINKPSPITMDMIFSATGKNIPF 60 Query: 63 RPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEAVA 122 R + VM GGPVQVERG+V+H+ + S++ V+D +ALT+S+DV+E ++ Sbjct: 61 R---------MQHDSVMMGGPVQVERGYVVHTPIGNWQSSIGVSDNIALTSSRDVIENIS 111 Query: 123 HGDGPERVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPAIIFELPVEQRFTAALALLGID 182 +++L+++G S W GQLE E+ N WLTV AD I+F++P E R+ AA A LGID Sbjct: 112 REGAVDKILISIGYSSWGKGQLERELADNAWLTVPADEHILFDIPYEHRYAAAFAKLGID 171 Query: 183 PVMLSGDAGRA 193 P+ L AG A Sbjct: 172 PLALFSGAGHA 182 >PA0405 [K] COG1678 Putative transcriptional regulator Pae Pseudomonas aeruginosa Length = 189 Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 91/191 (47%), Positives = 126/191 (65%), Gaps = 12/191 (6%) Query: 5 LTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINLKLEIRP 64 L +HFLIAMP M DP F TV YL EHN GA+G+VIN+P+ + + + +++ Sbjct: 9 LKHHFLIAMPHMADPNFAQTVTYLVEHNEQGAMGLVINRPSGLNLAEVLEQLK------- 61 Query: 65 DTPDAMP--ELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEAVA 122 PDA+P + GGPVQ +RGFVLH + Y STL++ E+A++TS+DVL A+A Sbjct: 62 --PDALPPARCQHIDIYNGGPVQTDRGFVLHPSGLSYQSTLEL-GELAMSTSQDVLFAIA 118 Query: 123 HGDGPERVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPAIIFELPVEQRFTAALALLGID 182 G GPE+ L++LG +GW GQLE E+ N WLT ADPAI+F+LP E+R +AA A LG++ Sbjct: 119 AGTGPEKSLISLGYAGWEAGQLEAELSDNAWLTCPADPAILFDLPPEERLSAAAARLGVN 178 Query: 183 PVMLSGDAGRA 193 +L+ AG A Sbjct: 179 LSLLTAQAGHA 189