BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0422.p (301 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1280 [G] COG0524 Sugar kinases, ribokinase family Rso Ralston... 317 2e-86 DR0728 [G] COG0524 Sugar kinases, ribokinase family Dra Deinococ... 225 1e-58 alr0517 [G] COG0524 Sugar kinases, ribokinase family Nos Nostoc ... 102 8e-22 ECs3242 [G] COG0524 Sugar kinases, ribokinase family Ecs Escheri... 100 4e-21 SMc02164 [G] COG0524 Sugar kinases, ribokinase family Sme Sinorh... 100 8e-21 >RSp1280 [G] COG0524 Sugar kinases, ribokinase family Rso Ralstonia solanacearum Length = 307 Score = 317 bits (812), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 164/295 (55%), Positives = 206/295 (69%), Gaps = 2/295 (0%) Query: 7 FVVFGEALTDFIRQPDGQWRAIPGGACWNVARAAARLGVPTGYAGSVSTDVFGAELYALT 66 VVFGEALTDFIR+ DG+WR++ GG+CWNVAR ARLG PTG+AG+VS DVFG EL AL+ Sbjct: 10 LVVFGEALTDFIREADGRWRSVAGGSCWNVARVCARLGAPTGFAGTVSRDVFGDELTALS 69 Query: 67 QAAGLDMRFTQQYAKAPLLAMVTSTTPPDYFFIGDDSADLHFDVQRLPSGWLDEAQVLHF 126 + AGLDMRF +Q A+ PLLAMV + PP YFFIG++SADL FD LP GW++ AQ++HF Sbjct: 70 RQAGLDMRFMRQVARPPLLAMVPAAHPPQYFFIGENSADLAFDTGVLPDGWIEAAQIVHF 129 Query: 127 GCISLTREPLASRLLQIAQEAALRNKKIAFDPNWRKLMDSPAYGILLRRLLSISHYVKVS 186 G +SL R+PLA+ LL+ A K+IAFDPN+R M P Y LRR+ ++ Y+KVS Sbjct: 130 GSLSLARQPLAAHLLETATAVHAAGKRIAFDPNYRDAMAGPDYRPTLRRMAGLASYIKVS 189 Query: 187 DEDLERLFP--GDSHALGTLQALAPQAEILYTLGAQGMQWIKGEQIIQQPAYRVEVIDTV 244 DEDL LFP ++ AL L+A AP A IL T GA GM I E + QPA V DTV Sbjct: 190 DEDLRGLFPELDETSALAQLRAWAPTAAILMTRGAAGMTLITPEGTLFQPALPTLVADTV 249 Query: 245 GCGDASMGGWIASQLRQPQAPAQVHLQCAAAGAAIAASKAGAYAATWDEVQQMIA 299 G GDASMGGW+AS L +P+A HL+ +AA AA ++ GAYA T +E+ +A Sbjct: 250 GAGDASMGGWLASLLTRPEAMPASHLEFSAASAAAVCARQGAYAPTREEIVSALA 304 >DR0728 [G] COG0524 Sugar kinases, ribokinase family Dra Deinococcus radiodurans Length = 303 Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 130/299 (43%), Positives = 167/299 (55%), Gaps = 2/299 (0%) Query: 1 MTQSAAFVVFGEALTDFIRQPDGQWRAIPGGACWNVARAAARLGVPTGYAGSVSTDVFGA 60 MT V GEALTD + W A PGGA WNVARA ARLGVP+ +AG+V D FG Sbjct: 1 MTSLPLIVSAGEALTDLVTAGGNTWHAHPGGAGWNVARACARLGVPSAFAGAVGQDNFGD 60 Query: 61 ELYALTQAAGLDMRFTQQYAKAPLLAMVTSTTPPDYFFIGDDSADLHFDVQRLPSGWLDE 120 +L+ + AGLD RF Q+ L+A+V ST PP Y F+G++SADLHFD RLP GWL Sbjct: 61 DLHRESLEAGLDPRFLQRVPAPTLMAVVYSTRPPQYRFLGENSADLHFDPTRLPGGWLGA 120 Query: 121 AQVLHFGCISLTREPLASRLLQIAQEAALRNKKIAFDPNWRKLMDSPAYGILLRRLLSIS 180 A+ LH G ISL R PLA LL + + A +I+FDPN R P Y + + + Sbjct: 121 ARWLHVGGISLARWPLADTLLGVIEAARAAGVRISFDPNARIAHRHPDYPAVFAAVTKRA 180 Query: 181 HYVKVSDEDLERLFPG--DSHALGTLQALAPQAEILYTLGAQGMQWIKGEQIIQQPAYRV 238 +K SDEDL FPG ++ AL L+ L P+ I+ T GA G + P V Sbjct: 181 DLLKFSDEDLAFFFPGASEAQALQELRGLNPRCPIVVTRGAAGASLYHSAGRVDLPTVPV 240 Query: 239 EVIDTVGCGDASMGGWIASQLRQPQAPAQVHLQCAAAGAAIAASKAGAYAATWDEVQQM 297 EV DTVG GD+ G + S +P A HL+ A++ + AGAYA T +EV + Sbjct: 241 EVADTVGAGDSLCAGLLVSATERPDALWTEHLRFGLGAASVTCAHAGAYAPTREEVAAL 299 >alr0517 [G] COG0524 Sugar kinases, ribokinase family Nos Nostoc sp. PCC 7120 Length = 325 Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 139/301 (46%), Gaps = 36/301 (11%) Query: 25 WRAIPGGACWNVARAAARLGVPTGYAGSVSTDVFGAELYALTQAAGLDMRFTQQYAKAPL 84 W A PGGA NVA A +LG P G+ G+V D G L L Q G+D Q+++ AP Sbjct: 31 WTAYPGGAPANVACALVKLGTPAGFIGAVGEDEPGNVLVKLLQEVGVDTTGVQRHSTAPT 90 Query: 85 LAM-VTSTTPPDYFFIG------DDSADLHFDVQRLPSGWLDEAQVLHFGCISLT---RE 134 + V D F G + AD H ++LP EA L G + L E Sbjct: 91 RQVYVVRDLAGDRTFAGFGQYDTSEFADTHLQAKQLPESVFQEADFLILGTLELAYPDSE 150 Query: 135 PLASRLLQIAQEAALRNKKIAFDPNWRKLM--DSPAYGILLRRLLSISHYVKVSDEDLER 192 R L++A++ L KI D NWR + D ++ + ++K++ E+ E Sbjct: 151 KAIHRALELAEQYDL---KIVLDVNWRPVFWHDENIARQKIQEIFKRVDFLKLAKEEAEW 207 Query: 193 LF----PGD-SHALGTLQALAPQAEILYTLGAQGMQWIKGEQIIQQPAYRVEVIDTVGCG 247 LF PG ++ LG+++ +L T G G + GE + PA+ V V+DT G G Sbjct: 208 LFDTSDPGAITYRLGSIEG------VLVTDGENGCGYCLGENEGKIPAFAVSVVDTTGAG 261 Query: 248 DASMGGWI-------ASQLRQPQAPAQVHLQCAAAGAAIAASKAGAYAA--TWDEVQQMI 298 D+ + G+I L + ++ + A+A A+ +KAGA A+ T EV+ + Sbjct: 262 DSFLAGFIHQLSEHGIHNLNDAETAKRI-ITYASAVGALTTTKAGAIASQPTAMEVETFL 320 Query: 299 A 299 A Sbjct: 321 A 321 >ECs3242 [G] COG0524 Sugar kinases, ribokinase family Ecs Escherichia coli O157:H7 Length = 304 Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 138/298 (46%), Gaps = 15/298 (5%) Query: 4 SAAFVVFGEALTDFIRQPDGQWRAIPGGACWNVARAAARLGVPTGYAGSVSTDVFGAELY 63 SA V G+A+ D + + DG+ PGGA NVA ARLG +G+ G V D FGA + Sbjct: 2 SAKVWVLGDAVVDLLPESDGRLLPCPGGAPANVAVGIARLGGTSGFIGRVGDDPFGALMQ 61 Query: 64 ALTQAAGLDMRFTQQ---YAKAPLLAMVTSTTPPDYFFIGDDSADLHFDVQRLPSGWLDE 120 G+D+ + +Q + + +L + + F+ SADL + LP W Sbjct: 62 RTLLTEGVDITYLKQDEWHRTSTVLVDLNDQGERSFTFMVRPSADLFLETTDLPC-W-RH 119 Query: 121 AQVLHFGCISLTREPLASRLLQIAQEAALRNKKIAFDPNWRKLM--DSPAYGILLRRLLS 178 + LH I+L+ EP + E ++FDPN R+ + D + LR+ L Sbjct: 120 GEWLHLCSIALSAEPSRTSAFTAMTEIRHAGGFVSFDPNIREDLWQDEHLLRLCLRQALQ 179 Query: 179 ISHYVKVSDEDLERLFPGDSHALGTLQALAPQAEI---LYTLGAQGMQWIKGEQIIQQPA 235 ++ VK+S+E+ RL G + + ALA + EI L T GA+G+ Q+ Sbjct: 180 LADVVKLSEEEW-RLISGKTQNDRDICALAKEYEIAMLLVTKGAEGVVVCYRGQVHHFAG 238 Query: 236 YRVEVIDTVGCGDASMGGWI----ASQLRQPQAPAQVHLQCAAAGAAIAASKAGAYAA 289 V+ +D+ G GDA + G + ++ L + + + A A+A + GA A Sbjct: 239 MSVDCVDSTGAGDAFVAGLLTGLSSTGLSTDEREMRRIIDLAQRCGALAVTAKGAMTA 296 >SMc02164 [G] COG0524 Sugar kinases, ribokinase family Sme Sinorhizobium meliloti Length = 308 Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 122/264 (46%), Gaps = 22/264 (8%) Query: 8 VVFGEALTDFIRQP----DGQWRAIPGGACWNVARAAARLGVPTGYAGSVSTDVFGAELY 63 V GEAL D + + + + GGA +N A A RLGVPTG+ +S D+FG L Sbjct: 3 VCCGEALIDMLPRETTAGESAFAPYAGGAIFNTAVALGRLGVPTGFFTGLSDDMFGDILR 62 Query: 64 ALTQAAGLDMRFTQQYAKAPLLAMVTSTT-PPDYFFIGDDSADLHFDVQRLPSGWLDEAQ 122 A +AA +D LA V Y F +++A + LP+ D + Sbjct: 63 ATLKAANVDFAPCATLPLHTTLAFVKLVDGHASYAFFDENTAGRMITAEHLPA-LGDFCE 121 Query: 123 VLHFGCISLTREPLASRLLQI-AQEAALRNKKIAFDPNWRK--LMDSPAYGILLRRLLSI 179 LHFG ISL EP S + A+E + I+FDPN R + D A+ + R+ ++ Sbjct: 122 ALHFGAISLIPEPCGSTYEALMAREH--EKRVISFDPNIRPGFIKDREAHVGRMNRMAAM 179 Query: 180 SHYVKVSDEDLERLFPGDSHALGTLQALAPQ------AEILYTLGAQGMQWIKGEQIIQQ 233 S VK SDEDL SH ALA + +L T GA G ++ Sbjct: 180 SDIVKFSDEDLAWFGMEGSH-----DALAAEWLKRGPKLVLITRGADGAVGYTNGHKVEV 234 Query: 234 PAYRVEVIDTVGCGDASMGGWIAS 257 + RVEV+DTVG GD G +AS Sbjct: 235 ASERVEVVDTVGAGDTFDAGVLAS 258