BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0400.p         (180 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0503 [L] COG0817 Holliday junction resolvasome, endonuclease ...   259   2e-69
NMA1631 [L] COG0817 Holliday junction resolvasome, endonuclease ...   177   1e-44
NMB1419 [L] COG0817 Holliday junction resolvasome, endonuclease ...   176   2e-44
VC1847 [L] COG0817 Holliday junction resolvasome, endonuclease s...   169   3e-42
PA0965 [L] COG0817 Holliday junction resolvasome, endonuclease s...   158   7e-39

>RSc0503 [L] COG0817 Holliday junction resolvasome, endonuclease subunit Rso
           Ralstonia solanacearum
          Length = 181

 Score =  259 bits (662), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/181 (71%), Positives = 149/181 (82%), Gaps = 1/181 (0%)

Query: 1   MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKSP-DGDLPSRLKVILSSVGEVVRTYA 59
           M+ILGIDPGLRTTGFGV+ + G+ L Y+ASGTIKS  + DLPSRLK +   V E+VRTY 
Sbjct: 1   MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRTYR 60

Query: 60  PDCAAIEKVFVNVNPQSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKA 119
           PDCA+IEKVFVNVNPQSTLLLGQARGA IC L++ +L V EYTALQ+KQAV G+GRA K 
Sbjct: 61  PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120

Query: 120 QVQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGTLAPALARKGIRMRGGRLV 179
           QVQ+MV RLL L G PGTDAADALGVAICHAHGG  L+ +  LAP LARKG+R+R GRLV
Sbjct: 121 QVQDMVVRLLNLEGRPGTDAADALGVAICHAHGGETLAAMAGLAPQLARKGLRVRRGRLV 180

Query: 180 G 180
           G
Sbjct: 181 G 181


>NMA1631 [L] COG0817 Holliday junction resolvasome, endonuclease subunit NmA
           Neisseria meningitidis Z2491
          Length = 180

 Score =  177 bits (448), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 123/179 (68%), Gaps = 7/179 (3%)

Query: 1   MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKSP-DGDLPSRLKVILSSVGEVVRTYA 59
           ++ILGIDPG R TGFGVI  +G    Y+ASG IK+P D  L  R+ VI+  +GEVV  Y 
Sbjct: 7   VRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVVTVYK 66

Query: 60  PDCAAIEKVFVNVNPQSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKA 119
           P  AA+E+VFVNVNP STL+LGQARGAA+ ALV+  L V+EYTALQVKQAV G G+A K 
Sbjct: 67  PQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGKAAKE 126

Query: 120 QVQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGTLAPALARKGIRMRGGRL 178
           QVQ MV ++L L G P  DAAD L VA+ HA     L + G LA  L   G++++ GR 
Sbjct: 127 QVQHMVVQMLGLSGTPQPDAADGLAVALTHA-----LRNHG-LAAKLNPSGMQVKRGRF 179


>NMB1419 [L] COG0817 Holliday junction resolvasome, endonuclease subunit Nme
           Neisseria meningitidis MC58
          Length = 178

 Score =  176 bits (447), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 123/179 (68%), Gaps = 7/179 (3%)

Query: 1   MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKSP-DGDLPSRLKVILSSVGEVVRTYA 59
           ++ILGIDPG R TGFGVI  +G    Y+ASG IK+P D  L  R+ VI+  +GEVV  Y 
Sbjct: 5   VRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVVTVYK 64

Query: 60  PDCAAIEKVFVNVNPQSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKA 119
           P  AA+E+VFVNVNP STL+LGQARGAA+ ALV+  L V+EYTALQVKQAV G G+A K 
Sbjct: 65  PQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGKAAKE 124

Query: 120 QVQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGTLAPALARKGIRMRGGRL 178
           QVQ MV ++L L G P  DAAD L VA+ HA     L + G LA  L   G++++ GR 
Sbjct: 125 QVQHMVVQMLGLSGTPQPDAADGLAVALTHA-----LRNHG-LAAKLNPSGMQVKRGRF 177


>VC1847 [L] COG0817 Holliday junction resolvasome, endonuclease subunit Vch
           Vibrio cholerae
          Length = 173

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/168 (55%), Positives = 114/168 (67%), Gaps = 1/168 (0%)

Query: 3   ILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKSPDGDLPSRLKVILSSVGEVVRTYAPDC 62
           ILGIDPG R TG+GVI +QG  L Y+ SG I++ D +LP RLK I + V E++  + PD 
Sbjct: 4   ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRTSDLELPLRLKQIYAGVSEIITQFQPDA 63

Query: 63  AAIEKVFVNVNPQSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQVQ 122
            AIE+VF+  N  S L LGQARG+AI A V A+L V EY A  +KQAV G G A K+QVQ
Sbjct: 64  FAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLIKQAVVGTGAADKSQVQ 123

Query: 123 EMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGTLAPALARKG 170
            MV ++LKLPG P  DAADALGVAICHA+    L  L   A + AR+G
Sbjct: 124 HMVQQMLKLPGKPQADAADALGVAICHANTNKTLIALAGQATS-ARRG 170


>PA0965 [L] COG0817 Holliday junction resolvasome, endonuclease subunit Pae
           Pseudomonas aeruginosa
          Length = 174

 Score =  158 bits (399), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 101/149 (67%)

Query: 3   ILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKSPDGDLPSRLKVILSSVGEVVRTYAPDC 62
           ILGIDPG R TGFGV+ +      Y+ASG I++ +G L  RL V+  SV EV+RT+ P  
Sbjct: 4   ILGIDPGSRITGFGVVRETARGCEYVASGCIRTGNGPLHERLHVVFRSVREVIRTHGPTA 63

Query: 63  AAIEKVFVNVNPQSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQVQ 122
            +IE+VF+  N  S L LGQARGAAI A +   L+VAEYTA QVKQAV G G A K QVQ
Sbjct: 64  LSIEQVFMARNADSALKLGQARGAAIVAAMEEGLSVAEYTASQVKQAVVGTGGADKQQVQ 123

Query: 123 EMVARLLKLPGLPGTDAADALGVAICHAH 151
            MV  LLKL   P  DA+DAL +A+CHAH
Sbjct: 124 MMVMHLLKLTQKPQIDASDALAIALCHAH 152