BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0398.p (436 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value alr2966 [L] COG0415 Deoxyribodipyrimidine photolyase Nos Nostoc ... 179 8e-45 PA4660 [L] COG0415 Deoxyribodipyrimidine photolyase Pae Pseudomo... 93 1e-18 mll8094 [L] COG0415 Deoxyribodipyrimidine photolyase Mlo Mesorhi... 90 1e-17 Cgl0613 [L] COG0415 Deoxyribodipyrimidine photolyase Cgl Coryneb... 89 1e-17 VC1814 [L] COG0415 Deoxyribodipyrimidine photolyase Vch Vibrio c... 89 2e-17 >alr2966 [L] COG0415 Deoxyribodipyrimidine photolyase Nos Nostoc sp. PCC 7120 Length = 278 Score = 179 bits (455), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 94/198 (47%), Positives = 126/198 (63%), Gaps = 13/198 (6%) Query: 43 AARERIAAVHPGAYARTRNSLDGAVTGLSPYLTHGMVSLREVLAGVCSRHALEVQH---- 98 AA++ + V+P YA+TRN L G VT LSPY+ +G++SL E+ V V+H Sbjct: 38 AAQKALQKVNPATYAKTRNFLTGDVTRLSPYIRYGVLSLGEIRNYVLD----NVKHPDDA 93 Query: 99 -KFVYELGWRAFYRYVWARRGARIFD---SLHGGPLPDAAYARELPADIRAGATGLPVID 154 K + ELGWR +++ ++ + G I++ G P A YA +L ADI+ G TGL ID Sbjct: 94 KKLINELGWRDYWQRLYIKLGNGIWEDQEEYKTGYTP-AEYASDLAADIKEGKTGLVCID 152 Query: 155 QAVRTLYQTGTLHNHARMWLASYVVHLRKVHWRAGADWLVGHLLDGDLASNHLSWQWVAG 214 R L +TG LHNH RMWLA+Y+VH R++ W+ GA W + HLLDGD ASN++SWQWVA Sbjct: 153 SFSRELQETGYLHNHMRMWLAAYIVHWRRIRWQEGAKWFLEHLLDGDPASNNMSWQWVAS 212 Query: 215 TGSHKPYLFNAENVARYA 232 T S KPY FN EN+ RY Sbjct: 213 TFSQKPYFFNRENLERYT 230 >PA4660 [L] COG0415 Deoxyribodipyrimidine photolyase Pae Pseudomonas aeruginosa Length = 481 Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 92/171 (53%), Gaps = 13/171 (7%) Query: 66 AVTGLSPYLTHGMVSLREVL--AGVCSRHALEVQHK----FVYELGWRAFYRYVWARRGA 119 + LSPYL G++S R+ L A V +R + ++ EL WR FY+++ Sbjct: 240 GTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGY-P 298 Query: 120 RIFDSLHGGPLPDAAYARELPADIRA---GATGLPVIDQAVRTLYQTGTLHNHARMWLAS 176 R+ +A R+ PA++ A G TG+P+ID A+R L TG +HN RM +A Sbjct: 299 RVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAM 358 Query: 177 YVVHLRKVHWRAGADWLVGHLLDGDLASNHLSWQWVAGTGSHK-PY--LFN 224 ++ + WR G W + HL+DGDLA+N+ WQW A TG+ PY LFN Sbjct: 359 FLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFN 409 >mll8094 [L] COG0415 Deoxyribodipyrimidine photolyase Mlo Mesorhizobium loti Length = 477 Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 105/240 (43%), Gaps = 49/240 (20%) Query: 66 AVTGLSPYLTHGMVSLREVLAGVCSRHALEVQHKFVYELGWRAFYRYVWARRGARIFDSL 125 + + LSP+LT G ++ ++ A + R KF E+GWR F ++ Sbjct: 241 STSRLSPHLTFGEITPFQIFAAL-RRSKSSGTSKFRAEIGWREFSYHL----------LF 289 Query: 126 HGGPLPDAAYARELPA-----DIRA------GATGLPVIDQAVRTLYQTGTLHNHARMWL 174 H L + E A DIRA G TG P++D +R L++TG +HN RM + Sbjct: 290 HNPDLSGRNFRPEFDAMSWRDDIRALRTWQRGLTGYPIVDAGMRELWRTGWMHNRVRMIV 349 Query: 175 ASYVVHLRKVHWRAGADWLVGHLLDGDLASNHLSWQWVAGTGSH-KPY--LFN----AEN 227 AS+++ + WR G W L+D D A+N SWQWVAG+G+ PY +FN E Sbjct: 350 ASFLIKDLMIDWRHGEKWFWDTLVDADAANNPASWQWVAGSGADPAPYFRIFNPVLQGEK 409 Query: 228 V------------------ARYAPVEWHSPGTVVDTSYEALGAIALHPDPVAAEPAQRAR 269 RY W +P V+ LG +P+P+ A R R Sbjct: 410 FDPHGDYVRQHVPEISALPDRYIHRPWEAPAAVLKDKGIVLGKT--YPNPIVDHGAARER 467 >Cgl0613 [L] COG0415 Deoxyribodipyrimidine photolyase Cgl Corynebacterium glutamicum Length = 482 Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 108/241 (44%), Gaps = 34/241 (14%) Query: 16 PDDATAPLTSPVTPV--PLAVLAVLPTLAAARERIAAV--HPGAYARTRNSL-DGAVTGL 70 P+D P+ P V P A E++ H Y + R+SL A + L Sbjct: 195 PEDVELPILEMEQPFWSTTLVKECAPGEKNASEKLFDFLEHLQDYPQARDSLARSATSKL 254 Query: 71 SPYLTHGMVSLREVLAGVCSRHALEVQHKFVYELGWR--------------------AFY 110 S +L G +S+ V A + + E F+ EL WR F Sbjct: 255 SAHLRFGEISIHRVWAETAAIDS-EGTELFLKELLWRDFAWHRLYALPHMDTQNVRMQFN 313 Query: 111 RYVWARRGARIFDSLHGGPLP----DAAYARELPADIRAGATGLPVIDQAVRTLYQTGTL 166 R+ W+ + D L+ P A E A RAG TG+P++D +R L+ TG++ Sbjct: 314 RFGWSWDPSEK-DKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAGMRELWATGSM 372 Query: 167 HNHARMWLASYVVHLRKVHWRAGADWLVGHLLDGDLASNHLSWQWVAGTGSH-KPY--LF 223 HN RM +AS++ ++HWR G +W L+D D ASN +WQW AG+G PY +F Sbjct: 373 HNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSGDDASPYFRIF 432 Query: 224 N 224 N Sbjct: 433 N 433 >VC1814 [L] COG0415 Deoxyribodipyrimidine photolyase Vch Vibrio cholerae Length = 461 Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 7/184 (3%) Query: 41 LAAARERIAAVHPGAYARTRNSLDGA--VTGLSPYLTHGMVSLREVLAGVCSRHAL---- 94 L + +++ P Y TRN LDG T SP+L G VS + + A + A+ Sbjct: 207 LTHCQNYFSSLLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGAN 266 Query: 95 EVQHKFVYELGWRAFYRYVWARRGARIFD-SLHGGPLPDAAYARELPADIRAGATGLPVI 153 + + +EL WR ++ + R GA++F S G P ++ + + G T P++ Sbjct: 267 DSTYWIFFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIV 326 Query: 154 DQAVRTLYQTGTLHNHARMWLASYVVHLRKVHWRAGADWLVGHLLDGDLASNHLSWQWVA 213 + +R L QTG + N R +AS +VH + WR GA + L+D D+ SN +WQ++A Sbjct: 327 NACMRQLNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLA 386 Query: 214 GTGS 217 G G+ Sbjct: 387 GVGA 390