BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0393.p         (119 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO1788 Non COG                                                        47   8e-06
STM2011 Non COG                                                        43   2e-04
STM2508 Non COG                                                        40   0.002
STM2902 Non COG                                                        37   0.016
PH0900 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 famil...    29   2.3  

>YPO1788 Non COG
          Length = 108

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 11/86 (12%)

Query: 25  LTRDTQLNNDLDVTGDDAVDFMQHFFEEFTVDYGDYSFDRYF--VAEGFSPLELLLLLVS 82
           LT DT L+ DL +   +  D M  FF+EF+V  G+++   YF  V   F+P         
Sbjct: 29  LTPDTDLDTDLSIDELEIEDLMNDFFKEFSVQRGNFNIKNYFPDVPFSFNPF-------- 80

Query: 83  KKKRASYDRPPVTLRMLHQAALDGRW 108
            KK A    P  T+ ML ++A  GRW
Sbjct: 81  -KKTAPIPVPDFTIGMLIESAKAGRW 105


>STM2011 Non COG
          Length = 108

 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 11/86 (12%)

Query: 25  LTRDTQLNNDLDVTGDDAVDFMQHFFEEFTVDYGDYSFDRYFVAEGFS--PLELLLLLVS 82
           LT +  L+ DL +   +A D M  FFEE  V+ G++  + YF    FS  P         
Sbjct: 29  LTPEIDLDTDLSIDELEAEDLMNKFFEELNVERGNFRIETYFPNHPFSWHPF-------- 80

Query: 83  KKKRASYDRPPVTLRMLHQAALDGRW 108
            KK      P  T+ ML ++A  G+W
Sbjct: 81  -KKTEPVPVPDFTISMLIESAKAGKW 105


>STM2508 Non COG
          Length = 109

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 19  TNPKTPLTRDTQLNNDLDVTGDDAVDFMQHFFEEFTVDYGDYSFDRYFVAEGFSPLELLL 78
             PK  +T DT + +DL +  +D+ + +Q +F+ + VD   +    Y   E F       
Sbjct: 29  CGPKRIITLDTSIRDDLKLVFEDSEELLQKYFKRWNVDSEGFDILNYLNPEYFG------ 82

Query: 79  LLVSKKKRASYDRPPVTLRMLHQAALDGRW 108
                  +    R P+T+ ML ++A  GRW
Sbjct: 83  ------SKEPDPRKPLTVGMLVESAKAGRW 106


>STM2902 Non COG
          Length = 115

 Score = 36.6 bits (83), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 30  QLNNDL-DVTGDDAVDFMQHFFEEFTVDYGDYSFDRYFVAEGFSPLELLLLLVSKKKRAS 88
           +L++DL +  GDD  + +  F ++F VD     +  YF  E  +PL L      K++   
Sbjct: 35  ELDSDLFEAPGDDLHEALDKFEKKFNVDLSQVKWSCYFPWEN-TPL-LTRWFKLKREDVE 92

Query: 89  YDRPPVTLRMLHQAALDGRW 108
             R P+T+RM  ++A  G+W
Sbjct: 93  RTRKPLTIRMFSESAKAGKW 112


>PH0900 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Pho
           Pyrococcus horikoshii
          Length = 902

 Score = 29.3 bits (64), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 41  DAVDFMQHFFEEFTVDYGDYSFDRYFVAEGFSPLELLLLLVSKKKRASYDRPPVTLRMLH 100
           D  D  + FFEE      +   D+      +SPL LL +++ K+  +SY+    TL  + 
Sbjct: 207 DVSDEERKFFEELNRALFELVKDQ----ADYSPLTLLAVIIRKRASSSYEAALKTLTRIV 262

Query: 101 QAALDGRWDCAR 112
           +++  GR + A+
Sbjct: 263 ESSHRGRKEKAK 274