BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0388.p         (89 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1252 [K] COG1396 Predicted transcriptional regulators Rso Ral...    96   2e-20
AGl2513 [K] COG1396 Predicted transcriptional regulators Atu Agr...    49   4e-06
RSc1447 [K] COG1396 Predicted transcriptional regulators Rso Ral...    45   4e-05
hipB [K] COG1396 Predicted transcriptional regulators Eco Escher...    42   4e-04
CC2330 [K] COG1396 Predicted transcriptional regulators Ccr Caul...    39   0.003

>RSp1252 [K] COG1396 Predicted transcriptional regulators Rso Ralstonia
          solanacearum
          Length = 88

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 67/90 (74%), Gaps = 3/90 (3%)

Query: 1  MSEFPVRTGHQLPELLQAYRKQSGMTQIEVARRLGVTQQNLSSLERNADKVSAERLIELL 60
          M+EF VRT  QLP +L+ +RKQ+G++Q E+A R+G+ QQ LS+LERNA+ VSA RL+ LL
Sbjct: 1  MNEFIVRTPEQLPAMLKGFRKQAGLSQAELAARMGMRQQTLSALERNAENVSAGRLMRLL 60

Query: 61 NILGVELVLRKIEAVPSDSLASPL-DTPQW 89
          ++LGVELVLRK +A  S     P  D PQW
Sbjct: 61 SVLGVELVLRKPDA--SGEQGRPASDQPQW 88


>AGl2513 [K] COG1396 Predicted transcriptional regulators Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 145

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%)

Query: 20 RKQSGMTQIEVARRLGVTQQNLSSLERNADKVSAERLIELLNILGVELVLRKIEAVPSDS 79
          RK  GM+Q  +A RLG+T Q +   E+ A++V A RL  + +ILGVE+      A P   
Sbjct: 21 RKSLGMSQSALAGRLGITFQQVQKYEKGANRVGASRLQAIASILGVEVSSLFANATPDGG 80

Query: 80 LASP 83
           A+P
Sbjct: 81 AANP 84


>RSc1447 [K] COG1396 Predicted transcriptional regulators Rso Ralstonia
          solanacearum
          Length = 84

 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 38/60 (63%)

Query: 11 QLPELLQAYRKQSGMTQIEVARRLGVTQQNLSSLERNADKVSAERLIELLNILGVELVLR 70
          QL   L++ RK  G+TQ ++   LGV+Q  ++ +E++   V  E+L+ +L+ LG +L LR
Sbjct: 13 QLSAHLKSLRKARGLTQAQLGALLGVSQNRIADIEKDPGAVGFEQLLRILHALGAQLTLR 72


>hipB [K] COG1396 Predicted transcriptional regulators Eco Escherichia
          coli K12
          Length = 88

 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 38/69 (55%)

Query: 1  MSEFPVRTGHQLPELLQAYRKQSGMTQIEVARRLGVTQQNLSSLERNADKVSAERLIELL 60
          MS   + +  QL   ++  R+Q+G TQ E+A+++G+ Q  +S+ E N D  +     ++L
Sbjct: 2  MSFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKIL 61

Query: 61 NILGVELVL 69
            L + + L
Sbjct: 62 QSLELSMTL 70


>CC2330 [K] COG1396 Predicted transcriptional regulators Ccr Caulobacter
          vibrioides
          Length = 135

 Score = 38.9 bits (89), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 20 RKQSGMTQIEVARRLGVTQQNLSSLERNADKVSAERLIELLNIL 63
          RK  G++Q +VA  LG+T Q +   ER A+++SA +L +   +L
Sbjct: 25 RKMMGLSQTQVADALGITFQQIQKYERGANRISASKLYDAAKLL 68