BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0371.p (551 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 366 e-101 tsr [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escheri... 361 3e-99 ECs5315 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Esc... 358 2e-98 STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 358 3e-98 Ztsr [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escher... 356 7e-98 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust. Identities = 238/535 (44%), Positives = 330/535 (61%), Gaps = 17/535 (3%) Query: 8 KIGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGELATNWLPSIRSLNDMK---VALS 64 +IG +L AFA ++ L + I +L N G++ + I N +K + Sbjct: 7 RIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKNNGYKAN 66 Query: 65 RVRANEAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKALYPSVKERI 124 + +N + E + + A I N A A E+ ++ KAL+ + Sbjct: 67 GILSNLLLVTTPEQKTKYMSDYAAIRQAN----AQAYGRLEKLLTTDQGKALFKEQFDAR 122 Query: 125 EKFISLHDQTLALLSAGQADQAKQLLLGPA--FQNYLALLGELDKLAQVNLDGSVQSVHI 182 + + + AL+ A +A+ L G Q+ +L +DK+ V Sbjct: 123 SAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVL--VDKMVDHQAGEMEHDVSE 180 Query: 183 AEATYDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTAGAFANQVAAGDLTAEISAS 242 A A ++ +I L V + L+ FI R I+ P+ A A VA G+LT + Sbjct: 181 AAAQGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHLLEVD 240 Query: 243 SRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNLDLSSRTEEQASSLEE 302 ++DE G+L AL M E+L IVSQVR GT+TI AS+++++GN+DLSSRTE+QASSLEE Sbjct: 241 TQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEE 300 Query: 303 TASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIETMGNIDASSKKIVDI 362 TA+AMEQLTSTV+QNA+NA++A++LA AS +A +GG V + I+TM I+ SS+KIVDI Sbjct: 301 TAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDI 360 Query: 363 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKSLIDSS 422 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK+LI+ S Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDS 420 Query: 423 VQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQGIEQVNLAITQMDEVT 482 V V G+ V++AG + DVVA +Q VT++++EISA+S EQ+ GIEQ+N AITQMD+ T Sbjct: 421 VGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKAT 480 Query: 483 QQNAALVEEAASASQSLSHQTRQLSELVGVFRLP------GRAVQATGAALAEVA 531 Q+NA+LVEE+A+A+Q+L Q QL+++V F+L GRA Q ++A VA Sbjct: 481 QENASLVEESATAAQALQDQANQLADMVSTFKLHADLSGRGRAAQGEAGSVAHVA 535 >tsr [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escherichia coli K12 Length = 551 Score = 361 bits (926), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 254/564 (45%), Positives = 353/564 (62%), Gaps = 38/564 (6%) Query: 8 KIGTKLLLAFASILILTAFLGG--FAILQLGKVNDAAGELATNWLPSIR----SLNDMKV 61 KI T LLL A +L GG F L+ K N L +IR +LN V Sbjct: 6 KIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTV-------LQTIRQQQSTLNGSWV 58 Query: 62 ALSRVRA--NEA--QMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKALY 117 AL + R N A + + +N+ G +T+A +M SL A K++ + + P + Sbjct: 59 ALLQTRNTLNRAGIRYMMDQNNIGSGSTVAELMESASISLKQAEKNWADYEALPRDPRQS 118 Query: 118 PSVKERIEKFISLHDQTLA----LLSAGQA----DQAKQLLLGPAFQNYLALLGELDKLA 169 + I++ ++ LA LL AG+ DQ Q + Y+A + + D+L Sbjct: 119 TAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQDGFEKQYVAYMEQNDRLH 178 Query: 170 QVNLDGSVQSVHIAEATYDQSRFGIIALLVGSLLVGTLLAVF--IARIISAPLRTAGAFA 227 + +V A+Y Q+ + ++ +++ +++ + AV+ I + AP+ Sbjct: 179 DI-------AVSDNNASYSQAMWILVGVMI--VVLAVIFAVWFGIKASLVAPMNRLIDSI 229 Query: 228 NQVAAGDLTAEISASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNL 287 +A GDL I +E GQL+ +L M L R V VR+G I + +++I+TGN Sbjct: 230 RHIAGGDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNN 289 Query: 288 DLSSRTEEQASSLEETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIE 347 DLSSRTE+QA+SLEETA++MEQLT+TV+QNAENARQA+ LAL+AS AQ GGKVV V++ Sbjct: 290 DLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQ 349 Query: 348 TMGNIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQR 407 TM +I SS+KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQR Sbjct: 350 TMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQR 409 Query: 408 SATAAKEIKSLIDSSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQG 467 SA AA+EIKSLI+ SV +V VGSTLV+ AG TMA++V++V RVTD+M EI++AS+EQ++G Sbjct: 410 SAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRG 469 Query: 468 IEQVNLAITQMDEVTQQNAALVEEAASASQSLSHQTRQLSELVGVFRLPGRAVQATGAAL 527 I+QV LA+ +MD VTQQNAALVEE+A+A+ +L Q +L+E V VFR+ + + T A + Sbjct: 470 IDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQ-RETSAVV 528 Query: 528 AEVAPPAPGAIAGPANSDELWKTF 551 V P AP +A A+S+E W+TF Sbjct: 529 KTVTPAAPRKMA-VADSEENWETF 551 >ECs5315 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Escherichia coli O157:H7 Length = 554 Score = 358 bits (918), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 253/566 (44%), Positives = 351/566 (62%), Gaps = 39/566 (6%) Query: 8 KIGTKLLLAFASILILTAFLGG--FAILQLGKVNDAAGELATNWLPSIR----SLNDMKV 61 KI T LLL A +L GG F L+ K N L +IR +LN V Sbjct: 6 KIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTV-------LQTIRQQQSTLNGSWV 58 Query: 62 ALSRVRA--NEA--QMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKALY 117 AL + R N A + + +N+ G +T+A +M SL A K++ + + P + Sbjct: 59 ALLQTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAEKNWADYEALPRDPRQS 118 Query: 118 PSVKERIEKFISLHDQTLA----LLSAGQA----DQAKQLLLGPAFQNYLALLGELDKLA 169 + I++ ++ LA LL AG+ DQ Q + Y+A + + D+L Sbjct: 119 TAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQDGFEKQYVAYMEQNDRLY 178 Query: 170 QVNLDGSVQSVHIAEATYDQSRFGIIALLVGSLLVGTLLAVF--IARIISAPLRTAGAFA 227 + +V A+Y Q+ + ++ +++ +++ + AV+ I + AP+ Sbjct: 179 DI-------AVSDNNASYSQAMWILVGVMI--VVLAVIFAVWFGIKASLVAPMNRLIDSI 229 Query: 228 NQVAAGDLTAEISASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNL 287 +A GDL I +E GQL+ +L M L R V VR+G I + +++I+TGN Sbjct: 230 RHIAGGDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNN 289 Query: 288 DLSSRTEEQASSLEETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIE 347 DLSSRTE+QA+SLEETA++MEQLT+TV+QNAENARQA+ LAL+AS AQ GGKVV V++ Sbjct: 290 DLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQ 349 Query: 348 TMGNIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQR 407 TM +I SS+KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQR Sbjct: 350 TMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQR 409 Query: 408 SATAAKEIKSLIDSSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQG 467 SA AA+EIKSLI+ SV +V VGSTLV+ AG TMA++V++V RVTD+M EI++AS+EQ++G Sbjct: 410 SAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRG 469 Query: 468 IEQVNLAITQMDEVTQQNAALVEEAASASQSLSHQTRQLSELVGVFRL--PGRAVQATGA 525 I+QV LA+ +MD VTQQNAALVEE+A+A+ +L Q +L+E V VFR+ + + T A Sbjct: 470 IDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQQQRETSA 529 Query: 526 ALAEVAPPAPGAIAGPANSDELWKTF 551 + V P P +A A+S E W+TF Sbjct: 530 VVKTVTPATPRKMA-VADSGENWETF 554 >STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 553 Score = 358 bits (918), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 231/536 (43%), Positives = 339/536 (63%), Gaps = 36/536 (6%) Query: 30 FAILQLGKVNDAAGELATNWLPSIRSLNDMKVALSRVRANEAQMALYENDSGERTTIANI 89 F +LQ + +A L W+ +++ N + A R +++ + G T+A + Sbjct: 40 FTVLQTIRQQQSA--LNATWVELLQTRNTLNRAGIRWMMDQSNI-------GSGATVAEL 90 Query: 90 MNKNLNSLAAARKDYEEQISEPGE----KALYPSVKERIEKFISLHDQTLALLSAGQA-- 143 M N+L K++E+ + P + +A + +K + + + + LL AG+ Sbjct: 91 MQGATNTLKLTEKNWEQYEALPRDPRQSEAAFLEIKRTYDIYHGALAELIQLLGAGKINE 150 Query: 144 --DQAKQLLLGPAFQNYLALLGELDKLAQVNLDGSVQSVHIAEATYDQSRFGIIALLVGS 201 DQ Q + Y+A + + D+L + +V ++Y+Q+ + ++++L+ Sbjct: 151 FFDQPTQSYQDAFEKQYMAYMQQNDRLYDI-------AVEDNNSSYNQAMWVLVSVLIAV 203 Query: 202 LLVGTLLAVFIARIIS--APLRTAGAFANQVAAGDLTAEISASSRDETGQLSTALAAMNE 259 L+V ++AV+ +S AP+ +A+GDL I +E GQL+ L M Sbjct: 204 LVV--IIAVWFGIKLSLIAPMNRLIESIRHIASGDLVKRIDVEGSNEMGQLAENLRHMQS 261 Query: 260 SLRRIVSQVRSGTETIATASNQISTGNLDLSSRTEEQASSLEETASAMEQLTSTVRQNAE 319 L R V VR+G I + +++I+ GN DLSSRTE+QA+SLEETA++MEQLT+TV+QNAE Sbjct: 262 ELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAE 321 Query: 320 NARQANQLALTASSIAQEGGKVVHQVIETMGNIDASSKKIVDIIGVIDGIAFQTNILALN 379 NARQA+ LAL+AS AQ+GGKVV V++TM +I +SS+KI DII VIDGIAFQTNILALN Sbjct: 322 NARQASHLALSASETAQKGGKVVDNVVQTMRDIASSSQKIADIISVIDGIAFQTNILALN 381 Query: 380 AAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKSLIDSSVQQVGVGSTLVQQAGAT 439 AAVEAARAGEQGRGFAVVA EVR+LAQRSA AA+EIKSLI+ SV +V VGSTLV+ AG T Sbjct: 382 AAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVSRVDVGSTLVESAGET 441 Query: 440 MADVVASVQRVTDVMTEISAASNEQTQGIEQVNLAITQMDEVTQQNAALVEEAASASQSL 499 M ++V +V RVTD+M EI++AS+EQ++GI+QV LA+ +MD VTQQNA+LVEE+A+A+ +L Sbjct: 442 MDEIVNAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNASLVEESAAAAAAL 501 Query: 500 SHQTRQLSELVGVFRLPGRAVQATGAALAEVAPPAPGAIAGP----ANSDELWKTF 551 Q +L++ V VFR+ + +A A A P A++ P A+ + W+TF Sbjct: 502 EEQASRLTQAVAVFRIHQQQQRAREVA----AVKTPAAVSSPKAAVADGSDNWETF 553 >Ztsr [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escherichia coli O157:H7 EDL933 Length = 554 Score = 356 bits (914), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 252/566 (44%), Positives = 350/566 (61%), Gaps = 39/566 (6%) Query: 8 KIGTKLLLAFASILILTAFLGG--FAILQLGKVNDAAGELATNWLPSIR----SLNDMKV 61 KI T LLL A +L GG F L+ K N L +IR +LN V Sbjct: 6 KIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTV-------LQTIRQQQSTLNGSWV 58 Query: 62 ALSRVRA--NEA--QMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKALY 117 AL + R N A + + +N+ G +T+A +M SL A K++ + + P + Sbjct: 59 ALLQTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAEKNWADYEALPRDPRQS 118 Query: 118 PSVKERIEKFISLHDQTLA----LLSAGQA----DQAKQLLLGPAFQNYLALLGELDKLA 169 + I++ ++ LA LL AG+ DQ Q + Y+A + + D+L Sbjct: 119 TAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQDGFEKQYVAYMEQNDRLY 178 Query: 170 QVNLDGSVQSVHIAEATYDQSRFGIIALLVGSLLVGTLLAVF--IARIISAPLRTAGAFA 227 + +V A+Y Q+ + ++ +++ +++ + AV+ I + AP+ Sbjct: 179 DI-------AVSDNNASYSQAMWILVGVMI--VVLAVIFAVWFGIKASLVAPMNRLIDSI 229 Query: 228 NQVAAGDLTAEISASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNL 287 +A GDL I +E GQL+ +L M L R V VR+G I + +++I+TGN Sbjct: 230 RHIAGGDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNN 289 Query: 288 DLSSRTEEQASSLEETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIE 347 DL SRTE+QA+SLEETA++MEQLT+TV+QNAENARQA+ LAL+AS AQ GGKVV V++ Sbjct: 290 DLXSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQ 349 Query: 348 TMGNIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQR 407 TM +I SS+KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQR Sbjct: 350 TMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQR 409 Query: 408 SATAAKEIKSLIDSSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQG 467 SA AA+EIKSLI+ SV +V VGSTLV+ AG TMA++V++V RVTD+M EI++AS+EQ++G Sbjct: 410 SAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRG 469 Query: 468 IEQVNLAITQMDEVTQQNAALVEEAASASQSLSHQTRQLSELVGVFRL--PGRAVQATGA 525 I+QV LA+ +MD VTQQNAALVEE+A+A+ +L Q +L+E V VFR+ + + T A Sbjct: 470 IDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQQQRETSA 529 Query: 526 ALAEVAPPAPGAIAGPANSDELWKTF 551 + V P P +A A+S E W+TF Sbjct: 530 VVKTVTPATPRKMA-VADSGENWETF 554