BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0360.p         (183 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1385 [S] COG0762 Predicted integral membrane protein Rso Rals...   119   5e-27
yggT [S] COG0762 Predicted integral membrane protein Eco Escheri...    80   3e-15
ZyggT [S] COG0762 Predicted integral membrane protein EcZ Escher...    80   3e-15
ECs3828 [S] COG0762 Predicted integral membrane protein Ecs Esch...    80   3e-15
PA0392 [S] COG0762 Predicted integral membrane protein Pae Pseud...    79   5e-15

>RSp1385 [S] COG0762 Predicted integral membrane protein Rso Ralstonia
           solanacearum
          Length = 183

 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 4/158 (2%)

Query: 8   SIFTMIVNAVASILAGVMLLRFWMQVVRVRPPQSVGQFVYQLSDWLVRPLRRVMPGGSY- 66
            I   +++ + ++    +LLR W Q VR+ P   + Q ++QL+ WLV PLRR++P   Y 
Sbjct: 4   DITRFLLDTLFTLFGAALLLRAWTQAVRLSPRNPLSQSIFQLTGWLVHPLRRIIPATGYI 63

Query: 67  DWASLVAAFLIVLLSIIAILGWQSGFDFRLI---FIVALERFFEWICYGFMATLIIEAVF 123
           DW+SLVAA+L  L  ++ ++  +      L+   F+ AL    +W     +   I+ A+ 
Sbjct: 64  DWSSLVAAYLTALAYLVLLVAARGASPLGLLPFGFLAALFTVLKWGFNVLVWITIVSAIL 123

Query: 124 SWVNPHAPLAPFVRALNDPLLRPLRRIIPPLGGVDLSP 161
           SWV PHAP+A  +  L DPLLRP+RR++PP+GG+DLSP
Sbjct: 124 SWVAPHAPMAAVLNTLIDPLLRPIRRVLPPMGGLDLSP 161


>yggT [S] COG0762 Predicted integral membrane protein Eco Escherichia
           coli K12
          Length = 188

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 95/166 (57%), Gaps = 4/166 (2%)

Query: 7   LSIFTMIVNAVASILAGVMLLRFWMQVVRVRPPQSVGQFVYQLSDWLVRPLRRVMPG-GS 65
           ++  T +++ V  +   V+LLR WMQ           QFV +++  ++ PLRRV+P  G 
Sbjct: 1   MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGP 60

Query: 66  YDWASLVAAFLIVLLSIIAILGWQSGFDFRLIFIVALERFFEWICYGFMATLIIEAVFSW 125
            D ASL+ A+++  +   AI+ ++      +I+I  L    + I       L++ A+ SW
Sbjct: 61  IDSASLLVAYILSFIK--AIVLFKVVTFLPIIWIAGLLILLKTIGLLIFWVLLVMAIMSW 118

Query: 126 VNP-HAPLAPFVRALNDPLLRPLRRIIPPLGGVDLSPLVLLILLQI 170
           V+   +P+   +  L DPLLRP+RR++P +GG+D SP++L++LL +
Sbjct: 119 VSQGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYV 164


>ZyggT [S] COG0762 Predicted integral membrane protein EcZ Escherichia
           coli O157:H7 EDL933
          Length = 188

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 95/166 (57%), Gaps = 4/166 (2%)

Query: 7   LSIFTMIVNAVASILAGVMLLRFWMQVVRVRPPQSVGQFVYQLSDWLVRPLRRVMPG-GS 65
           ++  T +++ V  +   V+LLR WMQ           QFV +++  ++ PLRRV+P  G 
Sbjct: 1   MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGP 60

Query: 66  YDWASLVAAFLIVLLSIIAILGWQSGFDFRLIFIVALERFFEWICYGFMATLIIEAVFSW 125
            D ASL+ A+++  +   AI+ ++      +I+I  L    + I       L++ A+ SW
Sbjct: 61  IDSASLLVAYILSFIK--AIVLFKVVTFLPIIWIAGLLILLKTIGLLIFWVLLVMAIMSW 118

Query: 126 VNP-HAPLAPFVRALNDPLLRPLRRIIPPLGGVDLSPLVLLILLQI 170
           V+   +P+   +  L DPLLRP+RR++P +GG+D SP++L++LL +
Sbjct: 119 VSQGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYV 164


>ECs3828 [S] COG0762 Predicted integral membrane protein Ecs Escherichia
           coli O157:H7
          Length = 188

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 95/166 (57%), Gaps = 4/166 (2%)

Query: 7   LSIFTMIVNAVASILAGVMLLRFWMQVVRVRPPQSVGQFVYQLSDWLVRPLRRVMPG-GS 65
           ++  T +++ V  +   V+LLR WMQ           QFV +++  ++ PLRRV+P  G 
Sbjct: 1   MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGP 60

Query: 66  YDWASLVAAFLIVLLSIIAILGWQSGFDFRLIFIVALERFFEWICYGFMATLIIEAVFSW 125
            D ASL+ A+++  +   AI+ ++      +I+I  L    + I       L++ A+ SW
Sbjct: 61  IDSASLLVAYILSFIK--AIVLFKVVTFLPIIWIAGLLILLKTIGLLIFWVLLVMAIMSW 118

Query: 126 VNP-HAPLAPFVRALNDPLLRPLRRIIPPLGGVDLSPLVLLILLQI 170
           V+   +P+   +  L DPLLRP+RR++P +GG+D SP++L++LL +
Sbjct: 119 VSQGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYV 164


>PA0392 [S] COG0762 Predicted integral membrane protein Pae Pseudomonas
           aeruginosa
          Length = 197

 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 94/159 (59%), Gaps = 12/159 (7%)

Query: 13  IVNAVASILAGVMLLRFWMQVVRVRPPQSVGQFVYQLSDWLVRPLRRVMPG-GSYDWASL 71
           I+  + S+   ++LLRF +Q+VR      + QF+ + +  L+ PLRR++PG G  D ASL
Sbjct: 11  ILQTLGSLYLLIVLLRFILQLVRADFYNPLSQFIVRATKPLLNPLRRIIPGFGGIDLASL 70

Query: 72  VAAFLI---VLLSIIAILGWQ-SGFDFRLIF--IVALERFFEWICYGFMATLIIEAVFSW 125
           V A LI   +++ I+ ++G+   GF  +L+   I+A+   F  +   F   LII  + SW
Sbjct: 71  VLAILIQLVLMILILMLMGYGVGGFIMQLLIWSIIAVTSLFLKV---FFFALIISVILSW 127

Query: 126 VNP--HAPLAPFVRALNDPLLRPLRRIIPPLGGVDLSPL 162
           V P  + P A  V  + +PLL P R+++P LGG+DLSP+
Sbjct: 128 VAPGSYNPGAQLVNQICEPLLMPFRKLLPNLGGLDLSPI 166