BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0354.p (270 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2810 Non COG 205 1e-52 NMA2189 [R] COG4137 ABC-type uncharacterized transport system, p... 139 6e-33 NMB0296 [R] COG4137 ABC-type uncharacterized transport system, p... 137 2e-32 PA3747 [R] COG4137 ABC-type uncharacterized transport system, pe... 100 3e-21 XF0171 [R] COG4137 ABC-type uncharacterized transport system, pe... 95 2e-19 >RSc2810 Non COG Length = 303 Score = 205 bits (521), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/231 (54%), Positives = 158/231 (68%), Gaps = 1/231 (0%) Query: 37 LHGGALLSDMFAPDALRVGFAVMLSSTLWISVAAYWLENRNFSLDSMRVLVLPVAALAVI 96 +HG L +F +++ GFA LSS LW+ V YW+E+ FSL + +LV+PVA + + Sbjct: 73 VHGMLLHETIFPAASMKFGFAYALSSMLWLGVGIYWIESLFFSLAGLGLLVMPVALVGSL 132 Query: 97 LPTVFPGNLVALAGKSDWFLAHIAISILAYSTLTIAAFHAVLMVLQESRLHTRPGPVAQS 156 LP FPG + S F H AI+ +AY T+AAFHA+LM+ E RLHT P A+S Sbjct: 133 LPLAFPGTQILGYAASPLFKLHFAIANVAYGLFTLAAFHAILMLAAERRLHTINRP-AES 191 Query: 157 SWFGLALDRLPALLTMEKLLFRLIAFGFTLLTLTVLSGVVFSEQLFGTPLKWDHKTIFTM 216 W G LD LP LLT+EKLLFRLI GF LLTLT+ SG++FSEQLFG DHKT+F + Sbjct: 192 GWLGRWLDLLPPLLTLEKLLFRLIGAGFVLLTLTIASGMLFSEQLFGRAFHVDHKTVFAI 251 Query: 217 LSWLLFGLLLAGRRWQGWRGRTALSFTLAGFAILLLAYVGSRFVLEVVLHR 267 LSW +FG +L GRR+ GWRGR AL + +A FA L+LAYVGSRFVLEV+LHR Sbjct: 252 LSWAMFGGILIGRRFYGWRGRVALRWVMAAFATLMLAYVGSRFVLEVILHR 302 >NMA2189 [R] COG4137 ABC-type uncharacterized transport system, permease component NmA Neisseria meningitidis Z2491 Length = 268 Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 133/231 (57%), Gaps = 8/231 (3%) Query: 37 LHGGALLSDMFAPDALRVGFAVMLSSTLWISVAAYWLENRNFSLDSMRVLVLPVAALAVI 96 +HG ALL + + +GF S +W+ + Y+ + +SL +++L+ P AAL ++ Sbjct: 46 VHGAALLMPVIQDKIIIMGFGYSGSLIVWMMLFIYFAGSFFYSLRGVQLLLYPCAALMLL 105 Query: 97 LPTVFPGNLVALAGKSDWFLAHIAISILAYSTLTIAAFHAVLMVLQESRLHTRPGPVAQS 156 VFPG F+ HI S+LAY IA +VL +L LH R Sbjct: 106 SGLVFPGKFSGYEITDLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRN------ 159 Query: 157 SWFGLALDRLPALLTMEKLLFRLIAFGFTLLTLTVLSGVVFSEQLFGTPLKWDHKTIFTM 216 F LP+LL++EKL+F+ + GF LLT +V+SG F+E +FG P+ + HKT+F + Sbjct: 160 --FSKLAGFLPSLLSLEKLMFQAMWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGI 217 Query: 217 LSWLLFGLLLAGRRWQGWRGRTALSFTLAGFAILLLAYVGSRFVLEVVLHR 267 LSWL++G LL WRG+ A +T+ GF L++AY+GS+FVLE++L+R Sbjct: 218 LSWLIYGGLLLKHSMTAWRGKKAAVWTIIGFVSLMIAYMGSKFVLEIILNR 268 >NMB0296 [R] COG4137 ABC-type uncharacterized transport system, permease component Nme Neisseria meningitidis MC58 Length = 268 Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 131/231 (56%), Gaps = 8/231 (3%) Query: 37 LHGGALLSDMFAPDALRVGFAVMLSSTLWISVAAYWLENRNFSLDSMRVLVLPVAALAVI 96 +HG ALL + + +GF S +W+ + Y+ + + L +++L+ P AAL ++ Sbjct: 46 VHGAALLMPVIQDKIIIMGFGYSGSLIVWMMLFIYFAGSFFYPLRGVQLLLYPCAALMLL 105 Query: 97 LPTVFPGNLVALAGKSDWFLAHIAISILAYSTLTIAAFHAVLMVLQESRLHTRPGPVAQS 156 VFPG F+ HI S+LAY IA +VL +L LH R Sbjct: 106 SGLVFPGKFSGYEITDLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRS------ 159 Query: 157 SWFGLALDRLPALLTMEKLLFRLIAFGFTLLTLTVLSGVVFSEQLFGTPLKWDHKTIFTM 216 F LP+LL++EKL+F+ + GF LLT +V+SG F+E +FG P+ + HKT+F + Sbjct: 160 --FSKLAGFLPSLLSLEKLMFQAMWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGI 217 Query: 217 LSWLLFGLLLAGRRWQGWRGRTALSFTLAGFAILLLAYVGSRFVLEVVLHR 267 LSWL++G LL WRG+ A +T+ GF L++AY+GS+FVLE++L R Sbjct: 218 LSWLIYGGLLLKHSMTAWRGKKAAVWTIIGFVSLMIAYMGSKFVLEIILKR 268 >PA3747 [R] COG4137 ABC-type uncharacterized transport system, permease component Pae Pseudomonas aeruginosa Length = 266 Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 99/269 (36%), Positives = 145/269 (53%), Gaps = 20/269 (7%) Query: 7 ILAALFYLGCAFMP----SQRRAP----ISLGIVVGWVLHGGALLSDMFAPDALRVGFAV 58 ++AA+ YLG A S+R AP + L ++ V H +L + P L + F Sbjct: 8 LIAAVLYLGTAAYQGACVSKRTAPGKPLLLLFGLLALVAHAFSLYQQLLTPAGLVLDFFN 67 Query: 59 MLSSTLWISVAAYWLENRNFSLDSMRVLVLPVAALAVILPTVFPGNLVALAGKSDWFLAH 118 S + L ++++ +L+ P+ AL +L + P V + LAH Sbjct: 68 AASLIAAAVILLTLLATLRIPVENLLLLLFPLGALTTLLAVLIPHGTVEPINEQPGILAH 127 Query: 119 IAISILAYSTLTIAAFHAVLMVLQESRL-HTRPGPVAQSSWFGLALDRLPALLTMEKLLF 177 I +SILAY LTIA F A+L++LQ+ RL H P GL + P L TME LLF Sbjct: 128 ILLSILAYGLLTIAVFQALLLLLQDYRLKHKHPS--------GL-IRNFPPLQTMESLLF 178 Query: 178 RLIAFGFTLLTLTVLSGVVFSEQLFGTPLKWDHKTIFTMLSWLLFGLLLAGRRWQGWRGR 237 + G++LL+L++LSG +F + LF L HKTI + +W++F +LL GR GWRG Sbjct: 179 GFLWGGWSLLSLSLLSGWLFVDNLFAQHLA--HKTILSCFAWVVFAVLLWGRHQLGWRGH 236 Query: 238 TALSFTLAGFAILLLAYVGSRFVLEVVLH 266 A+ +TLAGF +L+LAY GS+ V E +LH Sbjct: 237 KAIRWTLAGFCLLMLAYFGSKLVREFILH 265 >XF0171 [R] COG4137 ABC-type uncharacterized transport system, permease component Xfa Xylella fastidiosa 9a5c Length = 282 Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/267 (33%), Positives = 136/267 (50%), Gaps = 20/267 (7%) Query: 3 TYFFILAALFYLGCA--FMPSQRRAPISLGIVVGWVLHGG-ALLSDMFAPDALRVGFAVM 59 TYF + LF C F RR + +VG + HGG L + A+ + F Sbjct: 11 TYFLAVWMLF---CELLFNDISRRGEWRIPALVGLLAHGGYHFLVILGNAGAVDMHFFSA 67 Query: 60 LSSTLWISVAAYWLENRNFSLDSMRVLVLPVAALAVILPTVFPGNLVALAGKSDWFLA-H 118 LS T ++ L + + + ++ V+V P+A L L V+ G + + + W + H Sbjct: 68 LSITFFVMSGLTILFSTHVGMGTVGVVVFPLAGL---LLAVYHGYGHSPSPELGWRVELH 124 Query: 119 IAISILAYSTLTIAAFHAVLMVLQESRLHTRPGPVAQSSWFGLALDRLPALLTMEKLLFR 178 +++L Y+TL IAA A+++ QE L R W G LP L +EKLLFR Sbjct: 125 ACLALLGYATLGIAALLAMMLWFQERALRQRN----VHHWRG----ALPPLTELEKLLFR 176 Query: 179 LIAFGFTLLTLTVLSGVVFSEQLFGTPLKWDHKTIFTMLSWLLFGLLLAGRRWQGWRGRT 238 I GF LLT TV +G +F L HK++ ++LSW++FG LL GR GWRG Sbjct: 177 TITVGFVLLTFTVFTGFLFVRDFLEQKLL--HKSVLSVLSWVIFGGLLIGRWRYGWRGIK 234 Query: 239 ALSFTLAGFAILLLAYVGSRFVLEVVL 265 A+ +TL L+LA+ GS+ ++E++L Sbjct: 235 AVHWTLTAMMFLVLAFFGSKLMIELML 261