BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0348.p         (146 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMA1545 [L] COG0556 Helicase subunit of the DNA excision repair ...    33   0.17 
NMB1331 [L] COG0556 Helicase subunit of the DNA excision repair ...    33   0.18 
PA1558 [R] COG3571 Predicted hydrolase of the alpha/beta-hydrola...    32   0.40 
RSc2808 [T] COG0642 Signal transduction histidine kinase Rso Ral...    32   0.67 
BMEI0926 [V] COG1566 Multidrug resistance efflux pump Bme Brucel...    29   3.4  

>NMA1545 [L] COG0556 Helicase subunit of the DNA excision repair complex NmA
           Neisseria meningitidis Z2491
          Length = 675

 Score = 33.5 bits (75), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 15/95 (15%)

Query: 31  VIGLAALSAASHVFAAGKPGNSEYQQQIAACKSGSSTEDR---ATCLR---EAGAAQ--- 81
           VI +A +SA   ++  G P  +EYQQ + + K G + E R   AT +    E G      
Sbjct: 142 VIIVATVSA---IYGIGDP--TEYQQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKR 196

Query: 82  -QAAARGTLTDPSPAQLKENALRRCEGLPQSDRID 115
                RG + D  PA+  ENALR      + DR+D
Sbjct: 197 GSFRVRGDVIDVYPAESSENALRISLFDDEIDRLD 231


>NMB1331 [L] COG0556 Helicase subunit of the DNA excision repair complex Nme
           Neisseria meningitidis MC58
          Length = 675

 Score = 33.1 bits (74), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 15/95 (15%)

Query: 31  VIGLAALSAASHVFAAGKPGNSEYQQQIAACKSGSSTEDR---ATCLR---EAGAAQ--- 81
           VI +A +SA   ++  G P  +EYQQ + + K G + E R   AT +    E G      
Sbjct: 142 VIIVATVSA---IYGIGDP--TEYQQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKR 196

Query: 82  -QAAARGTLTDPSPAQLKENALRRCEGLPQSDRID 115
                RG + D  PA+  ENALR      + DR+D
Sbjct: 197 GSFRVRGDVIDVYPAESSENALRISLFDDEIDRLD 231


>PA1558 [R] COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold
           Pae Pseudomonas aeruginosa
          Length = 210

 Score = 32.0 bits (71), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 20/91 (21%)

Query: 46  AGKPGNSEYQQQIAACKSGSSTEDRATCLREAGAAQQAAARGTLTDPSPAQLKENALRRC 105
           AG P +S + ++IA                    A Q  A      P  AQ +E+  +R 
Sbjct: 22  AGAPMDSPFMERIAEL-----------------LAAQGIAVARFEFPYMAQRREDGRKRP 64

Query: 106 EGLPQSDRIDCEKRVNGQGR--VDGSVAEGG 134
              PQ+  +DC +RV+ Q R  +DG +A GG
Sbjct: 65  PN-PQAQLLDCWRRVHAQVRETLDGPLALGG 94


>RSc2808 [T] COG0642 Signal transduction histidine kinase Rso Ralstonia
           solanacearum
          Length = 682

 Score = 31.6 bits (70), Expect = 0.67,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 15/79 (18%)

Query: 48  KPGNSEYQQQIAACKSGSSTEDRATCLREAGAAQQAAA----------RGTLTDPSPAQ- 96
           +P     ++Q+A          RA  LR AG A + +A          R  L DP+  Q 
Sbjct: 498 RPRGERVREQLAQVLPEVVERWRAEALRRAGEATEISADLVRVAVDLARPVLFDPAHLQQ 557

Query: 97  ----LKENALRRCEGLPQS 111
               L +NALR C G+P S
Sbjct: 558 VVGNLLDNALRYCRGVPGS 576


>BMEI0926 [V] COG1566 Multidrug resistance efflux pump Bme Brucella
           melitensis
          Length = 200

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 13  PAPTTSLRHQLLRSACAIVIGLAALSAASHVFAAGKPGNSEYQQQIAACKSGSSTEDRAT 72
           PA   S +H +LR    IV  + A++    ++ +G    SE    + A     + +    
Sbjct: 47  PAQDQSPKHPMLRRILLIVGPVVAIAIGLWIYFSGGQYVSEDDSYVGAAAVAITPQVSGQ 106

Query: 73  CLREAGAAQQAAARGTL---TDPSPAQLK 98
            +R A    Q    G L    DP P Q++
Sbjct: 107 VIRVAVGPNQPVKEGDLLFEIDPQPFQIE 135