BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0342.p         (85 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2821 [J] COG0211 Ribosomal protein L27 Rso Ralstonia solanace...   133   1e-31
VC0436 [J] COG0211 Ribosomal protein L27 Vch Vibrio cholerae          124   6e-29
YPO3511 [J] COG0211 Ribosomal protein L27 Ype Yersinia pestis         122   3e-28
STM3303 [J] COG0211 Ribosomal protein L27 Sty Salmonella typhimu...   120   9e-28
PM0348 [J] COG0211 Ribosomal protein L27 Pmu Pasteurella multocida    117   5e-27

>RSc2821 [J] COG0211 Ribosomal protein L27 Rso Ralstonia solanacearum
          Length = 86

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 73/85 (85%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIVRQRGTRVHAGENVGVGKDHTLF 60
          MA KKGGG+TRNGRDSESKRLGVKVYGGQ INAGGII+RQRGTR HAG NVG+GKDHTLF
Sbjct: 1  MAQKKGGGSTRNGRDSESKRLGVKVYGGQAINAGGIIIRQRGTRTHAGVNVGMGKDHTLF 60

Query: 61 ALKDGKVKFVVKGLQQRQYATVVPA 85
          AL DG VKF  +G  ++Q+  VVPA
Sbjct: 61 ALVDGHVKFATRGEGKKQFVDVVPA 85


>VC0436 [J] COG0211 Ribosomal protein L27 Vch Vibrio cholerae
          Length = 86

 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 70/85 (82%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIVRQRGTRVHAGENVGVGKDHTLF 60
          MAHKK GG+TRNGRDSESKRLGVK +GG+ + AG IIVRQRGT+ HAG NVG+GKDHTLF
Sbjct: 1  MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLF 60

Query: 61 ALKDGKVKFVVKGLQQRQYATVVPA 85
          AL DGKVKF VKG   R++ ++  A
Sbjct: 61 ALSDGKVKFEVKGPNNRKFVSIETA 85


>YPO3511 [J] COG0211 Ribosomal protein L27 Ype Yersinia pestis
          Length = 85

 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 69/82 (84%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIVRQRGTRVHAGENVGVGKDHTLF 60
          MAHKK GG+TRNGRDSESKRLGVK +GG+ + AG IIVRQRGT+ HAG NVG GKDHTLF
Sbjct: 1  MAHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLF 60

Query: 61 ALKDGKVKFVVKGLQQRQYATV 82
          AL DGKVKF VKG + R++ ++
Sbjct: 61 ALADGKVKFEVKGPKNRKFISI 82


>STM3303 [J] COG0211 Ribosomal protein L27 Sty Salmonella typhimurium LT2
          Length = 85

 Score =  120 bits (300), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 69/83 (83%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIVRQRGTRVHAGENVGVGKDHTLF 60
          MAHKK GG+TRNGRDSE+KRLGVK +GG+ + AG IIVRQRGT+ HAG NVG G+DHTLF
Sbjct: 1  MAHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLF 60

Query: 61 ALKDGKVKFVVKGLQQRQYATVV 83
          A  DGKVKF VKG + R+Y ++V
Sbjct: 61 AKADGKVKFEVKGPKNRKYISIV 83


>PM0348 [J] COG0211 Ribosomal protein L27 Pmu Pasteurella multocida
          Length = 85

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 69/84 (82%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIVRQRGTRVHAGENVGVGKDHTLF 60
          MA KK GG+TRNGRDSE+KRLGVK +GG+ + AG IIVRQRGT+ HAG NVG+G+DHTLF
Sbjct: 1  MATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGRDHTLF 60

Query: 61 ALKDGKVKFVVKGLQQRQYATVVP 84
          A  DGKVKF VKG + R+Y +++ 
Sbjct: 61 ATADGKVKFEVKGEKNRKYVSIIA 84