BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0333.p         (85 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA5556 [C] COG0056 F0F1-type ATP synthase, alpha subunit Pae Pse...    30   0.98 
YDL148c Non COG                                                        28   4.3  
alr2866 [M] COG0463 Glycosyltransferases involved in cell wall b...    28   7.3  
FN0830 [K] COG2865 Predicted transcriptional regulator containin...    27   7.6  

>PA5556 [C] COG0056 F0F1-type ATP synthase, alpha subunit Pae Pseudomonas
           aeruginosa
          Length = 514

 Score = 30.4 bits (67), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 19  RCTGRLDQWEVSAV---RIVDSLTQGEPLFPKRPLPGRSDSAAHAIDRGMAWARAV 71
           +CTGR+ +  V      R+VD+L  G P+  K P+  ++  A   +  G+ W ++V
Sbjct: 90  KCTGRILEVPVGPELLGRVVDAL--GNPIDGKGPIDAKATDAVEKVAPGVIWRKSV 143


>YDL148c Non COG
          Length = 810

 Score = 28.5 bits (62), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 23  RLDQWEVSAVRIVDSLTQGEPLFPKRPLPGRSDSAAHAIDRGMAWARAVIDQLDPTLDGE 82
           RLD +E+     VD   +   + P   L    D+ AH +D+ ++    V++ LD T+   
Sbjct: 592 RLDSYELGLPLDVDFTKKRSTIIPLHTL-STMDTEAHPVDQCVSVLLNVMESLDATISTV 650

Query: 83  WSA 85
           W +
Sbjct: 651 WKS 653


>alr2866 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis
           Nos Nostoc sp. PCC 7120
          Length = 279

 Score = 27.7 bits (60), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 4   PVEHQEQYKGFQVWLRCTGRLDQWEVSAVRIVDSLTQGE 42
           P +H    KGF  WL    R   W+  A ++VD L  G+
Sbjct: 169 PYDHYANSKGFGDWLERHNRYSSWD--AQKVVDFLETGK 205


>FN0830 [K] COG2865 Predicted transcriptional regulator containing an HTH
           domain and an uncharacterized domain shared with the
           mammalian protein Schlafen Fnu Fusobacterium nucleatum
          Length = 522

 Score = 27.3 bits (59), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 31  AVRIVDSLTQGEPLFPKRPLPGRSDSAAHAIDRGMAWARAVIDQLDPTLD 80
            V  VD+   GE   PKRP+ G  +S    I+  +   ++++  + P ++
Sbjct: 58  GVEEVDNKENGEKAIPKRPISGIKESMIEGIENDL---KSLLSNITPKIN 104