BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0329.p (417 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2826 [NU] COG1459 Type II secretory pathway, component PulF R... 388 e-107 XF2538 [NU] COG1459 Type II secretory pathway, component PulF Xf... 342 8e-94 PA4527 [NU] COG1459 Type II secretory pathway, component PulF Pa... 339 8e-93 NMB0333 [NU] COG1459 Type II secretory pathway, component PulF N... 310 4e-84 NMA2155 [NU] COG1459 Type II secretory pathway, component PulF N... 310 4e-84 >RSc2826 [NU] COG1459 Type II secretory pathway, component PulF Rso Ralstonia solanacearum Length = 421 Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/412 (45%), Positives = 280/412 (67%), Gaps = 13/412 (3%) Query: 6 RQPSTRPFRWEGLDRHGRPQRGLLQATDETQARAQLRRQGLRVARLRADVQAHAPNHAGP 65 + P+ F WEG DR G+ +G ++A T+ A LR+QGL + + + Sbjct: 23 KAPTQYIFEWEGKDRKGKIFKGEMRAESITEVNAVLRKQGLSITKSK------------- 69 Query: 66 RPRPLAKGRISDKQIALFTRQLATMLQAGLPLLQALDIAIRGSGQGAMAGLLTSVRQAVS 125 R R +I K IA FTRQL+TML+AG+PLLQ++DI RG LLT +R + Sbjct: 70 RRRAARGKKIVPKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDIE 129 Query: 126 RGDSLHAALAQHPRHFDALFCNLVRAAEDAGLLDTMLERIALYREKSLALKGKVRAALAY 185 G S+ A +HP+HFD+L+CNL+ A E G+LD +LER+++Y EKS+ALK ++++A+ Y Sbjct: 130 SGSSMAQAFRRHPQHFDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQIKSAMIY 189 Query: 186 PCAVVLVAIVVTVVIMLWVVPAFEQMFQQFGAELPLATRMVMSTARLLGQYGHLLLLSGI 245 P +V+ VA +VTVV+M++VVPAF+ +F FGA LP T +VM + ++ ++++ + I Sbjct: 190 PISVLTVAFLVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMGISDFFVKWWYIIIFTPI 249 Query: 246 ALAVLVRQAWLRYPPMRRAAQRLSLSLPLFGPLLRQAALARWSRTFGALFGAGIALVEAL 305 L +A+ R ++R + L +P+FG ++R+A +ARW+RT +F AG LVE++ Sbjct: 250 VGIFLYVRAFKRSEKVQRNTHKAILKMPIFGSIIRKATIARWTRTLATMFSAGTPLVESM 309 Query: 306 ETVAGAAGNVVYAEASLAVRDAVRNGASLHTAMQASGVFPDLAIQMTAVGEEAGALDAML 365 E+VAGAAGN VY +A++ ++ AVR G SL AMQA+ VF ++ +QMT +GEE+GALD ML Sbjct: 310 ESVAGAAGNWVYYDATMEIQQAVRIGTSLTNAMQATHVFDNMVLQMTQIGEESGALDNML 369 Query: 366 GKIAELNEREVDDAVAALTSLMEPVIMAVLGVVIGGLVVAMYLPVFRMGALV 417 K+AE EREVDDAVA +++L+EP+I+ +LGV+IGG+VVAMYLP+F++G +V Sbjct: 370 LKVAEFYEREVDDAVANISALIEPLIIVILGVLIGGMVVAMYLPIFKLGQVV 421 >XF2538 [NU] COG1459 Type II secretory pathway, component PulF Xfa Xylella fastidiosa 9a5c Length = 490 Score = 342 bits (878), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 181/422 (42%), Positives = 269/422 (63%), Gaps = 23/422 (5%) Query: 3 APERQPSTRPFRWEGLDRHGRPQRGLLQATDETQARAQLRRQGLRVARLRADVQAHAPNH 62 A P F WEG D+ G +G A RA+LRRQG+ P Sbjct: 84 AGNTSPPLTSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGI------------TPLV 131 Query: 63 AGPRPRPL---AKGRISDKQIALFTRQLATMLQAGLPLLQALDIAIRGSGQGAMAGLLTS 119 PRP+PL A RI+ K IA F+RQ+ATM++AG+P++ ALDI G M ++ Sbjct: 132 VKPRPKPLFGQAGKRITPKDIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQ 191 Query: 120 VRQAVSRGDSLHAALAQHPRHFDALFCNLVRAAEDAGLLDTMLERIALYREKSLALKGKV 179 ++ + G SL+ ++++HP +FD L+ NLVRA E AG+L+T+L+ IA Y+E ALKGK+ Sbjct: 192 IKNDIEGGSSLYESISKHPVYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGKI 251 Query: 180 RAALAYPCAVVLVAIVVTVVIMLWVVPAFEQMFQQFGAELPLATRMVMSTARLLGQYGHL 239 R AL YP A+V VA++V+ +++++VVP FE +F+ FGAELP T+M+++ + + ++ Sbjct: 252 RKALFYPVAIVAVALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWA 311 Query: 240 LLLSGIALAVLVRQAWL----RYPPMRRAAQRLSLSLPLFGPLLRQAALARWSRTFGALF 295 +L AL ++V L R M+ RL L P+ G ++ +ALAR+SRT F Sbjct: 312 ML----ALLIVVIGGGLFTYKRSESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTF 367 Query: 296 GAGIALVEALETVAGAAGNVVYAEASLAVRDAVRNGASLHTAMQASGVFPDLAIQMTAVG 355 AG+ LVEAL VAGA GN VY++A +RD V G S++ +M+ G+FP + +QM ++G Sbjct: 368 RAGVPLVEALGIVAGATGNKVYSDAVFRMRDDVSVGYSINMSMRQVGIFPHMVVQMASIG 427 Query: 356 EEAGALDAMLGKIAELNEREVDDAVAALTSLMEPVIMAVLGVVIGGLVVAMYLPVFRMGA 415 EEAGALDAML K+AE E+EV +AV L+SL+EP+IM +GV++GG+V+AMYLP+F++ + Sbjct: 428 EEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLAS 487 Query: 416 LV 417 +V Sbjct: 488 VV 489 >PA4527 [NU] COG1459 Type II secretory pathway, component PulF Pae Pseudomonas aeruginosa Length = 374 Score = 339 bits (869), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 165/380 (43%), Positives = 258/380 (67%), Gaps = 10/380 (2%) Query: 38 RAQLRRQGLRVARLRADVQAHAPNHAGPRPRPLAKGRISDKQIALFTRQLATMLQAGLPL 97 +A LR+QG+ ++R + + AG + +P+ IALFTRQ+ATM+ AG+PL Sbjct: 4 KAHLRKQGINPLKVRK--KGISLLGAGKKVKPM--------DIALFTRQMATMMGAGVPL 53 Query: 98 LQALDIAIRGSGQGAMAGLLTSVRQAVSRGDSLHAALAQHPRHFDALFCNLVRAAEDAGL 157 LQ+ DI G M L+ ++Q VS G+SL +L + P++FD L+CNLV A E +G Sbjct: 54 LQSFDIIGEGFDNPNMRKLVDEIKQEVSSGNSLANSLRKKPQYFDELYCNLVDAGEQSGA 113 Query: 158 LDTMLERIALYREKSLALKGKVRAALAYPCAVVLVAIVVTVVIMLWVVPAFEQMFQQFGA 217 L+ +L+R+A Y+EK+ +LK K+R A+ YP AV++VA++V+ ++++ VVP F+ +FQ FGA Sbjct: 114 LENLLDRVATYKEKTESLKAKIRKAMTYPIAVIIVALIVSAILLIKVVPQFQSVFQGFGA 173 Query: 218 ELPLATRMVMSTARLLGQYGHLLLLSGIALAVLVRQAWLRYPPMRRAAQRLSLSLPLFGP 277 ELP T+MV++ + L ++ +++ A+ ++ R R R L LP+FG Sbjct: 174 ELPAFTQMVVNLSEFLQEWWLAVIVGVGAIGFTFKELHKRSKKFRDTLDRTILKLPIFGG 233 Query: 278 LLRQAALARWSRTFGALFGAGIALVEALETVAGAAGNVVYAEASLAVRDAVRNGASLHTA 337 ++ ++A+AR++RT F AG+ LV+AL++V+GA GN+V+ A ++ V G L+ + Sbjct: 234 IVYKSAVARYARTLSTTFAAGVPLVDALDSVSGATGNIVFKNAVSKIKQDVSTGMQLNFS 293 Query: 338 MQASGVFPDLAIQMTAVGEEAGALDAMLGKIAELNEREVDDAVAALTSLMEPVIMAVLGV 397 M+ + VFP++AIQMTA+GEE+G+LD ML K+A E EVD+AV LT+LMEP+IMAVLGV Sbjct: 294 MRTTSVFPNMAIQMTAIGEESGSLDEMLSKVASYYEEEVDNAVDNLTTLMEPMIMAVLGV 353 Query: 398 VIGGLVVAMYLPVFRMGALV 417 ++GGL+VAMYLP+F++G +V Sbjct: 354 LVGGLIVAMYLPIFQLGNVV 373 >NMB0333 [NU] COG1459 Type II secretory pathway, component PulF Nme Neisseria meningitidis MC58 Length = 410 Score = 310 bits (794), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 164/411 (39%), Positives = 269/411 (65%), Gaps = 20/411 (4%) Query: 11 RPFRWEGLDRHGRPQR---GLLQATDETQARAQLRRQGLRVARLRADVQAHAPNHAGPRP 67 + F +EG RH + G + A E +AR +L ++G+R ++ R Sbjct: 15 KRFIFEG--RHSASDKLVNGEVSAFTEEEARKKLAKRGIRPLQI-------------TRV 59 Query: 68 RPLAKGRISDKQIALFTRQLATMLQAGLPLLQALDIAIRGSGQGAMAGLLTSVRQAVSRG 127 + +K +I+ + I +FTRQL+TM++AGLPL+QA +I RG G +M +L +R V +G Sbjct: 60 KTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQG 119 Query: 128 DSLHAALAQHPRHFDALFCNLVRAAEDAGLLDTMLERIALYREKSLALKGKVRAALAYPC 187 SL A + HP++FD +CNLV A E G+L+++L+++A+Y+EK+ A++ KV+ AL YP Sbjct: 120 SSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPV 179 Query: 188 AVVLVAIVVTVVIMLWVVPAFEQMFQQFGAELPLATRMVMSTARLLGQYGHLLLLS-GIA 246 +V+ VAI + V+M++V+PAF++++ GAELP T+ VM + YG ++L++ G A Sbjct: 180 SVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVLIALGFA 239 Query: 247 LAVLVRQAWLRYPPMRRAAQRLSLSLPLFGPLLRQAALARWSRTFGALFGAGIALVEALE 306 + ++ R ++R + L +P+FG ++R+ +ARW RT L AG+ LV+ L+ Sbjct: 240 IYGFLKLK-ARSIKIQRRMDAILLRMPIFGDIVRKGTIARWGRTTATLIAAGVPLVDVLD 298 Query: 307 TVAGAAGNVVYAEASLAVRDAVRNGASLHTAMQASGVFPDLAIQMTAVGEEAGALDAMLG 366 + AGAAGN++Y EA+ +R V G S+ + M+A+ +FP++ +QM+++GEE+G+LD ML Sbjct: 299 STAGAAGNLIYEEATREIRTRVIQGLSMTSGMRATELFPNMMLQMSSIGEESGSLDDMLN 358 Query: 367 KIAELNEREVDDAVAALTSLMEPVIMAVLGVVIGGLVVAMYLPVFRMGALV 417 K AE E EVD+AV L+++MEP+I+ +LG+VIG L+VAMYLP+F +G +V Sbjct: 359 KAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIGTLLVAMYLPLFNLGNVV 409 >NMA2155 [NU] COG1459 Type II secretory pathway, component PulF NmA Neisseria meningitidis Z2491 Length = 410 Score = 310 bits (794), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 164/411 (39%), Positives = 269/411 (65%), Gaps = 20/411 (4%) Query: 11 RPFRWEGLDRHGRPQR---GLLQATDETQARAQLRRQGLRVARLRADVQAHAPNHAGPRP 67 + F +EG RH + G + A E +AR +L ++G+R ++ R Sbjct: 15 KRFIFEG--RHSASDKLVNGEVSAFTEEEARKKLAKRGIRPLQI-------------TRV 59 Query: 68 RPLAKGRISDKQIALFTRQLATMLQAGLPLLQALDIAIRGSGQGAMAGLLTSVRQAVSRG 127 + +K +I+ + I +FTRQL+TM++AGLPL+QA +I RG G +M +L +R V +G Sbjct: 60 KTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQG 119 Query: 128 DSLHAALAQHPRHFDALFCNLVRAAEDAGLLDTMLERIALYREKSLALKGKVRAALAYPC 187 SL A + HP++FD +CNLV A E G+L+++L+++A+Y+EK+ A++ KV+ AL YP Sbjct: 120 SSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPV 179 Query: 188 AVVLVAIVVTVVIMLWVVPAFEQMFQQFGAELPLATRMVMSTARLLGQYGHLLLLS-GIA 246 +V+ VAI + V+M++V+PAF++++ GAELP T+ VM + YG ++L++ G A Sbjct: 180 SVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVLIALGFA 239 Query: 247 LAVLVRQAWLRYPPMRRAAQRLSLSLPLFGPLLRQAALARWSRTFGALFGAGIALVEALE 306 + ++ R ++R + L +P+FG ++R+ +ARW RT L AG+ LV+ L+ Sbjct: 240 IYGFLKLK-ARSIKIQRRMDAILLRMPIFGDIVRKGTIARWGRTTATLIAAGVPLVDVLD 298 Query: 307 TVAGAAGNVVYAEASLAVRDAVRNGASLHTAMQASGVFPDLAIQMTAVGEEAGALDAMLG 366 + AGAAGN++Y EA+ +R V G S+ + M+A+ +FP++ +QM+++GEE+G+LD ML Sbjct: 299 STAGAAGNLIYEEATREIRTRVIQGLSMTSGMRATELFPNMMLQMSSIGEESGSLDDMLN 358 Query: 367 KIAELNEREVDDAVAALTSLMEPVIMAVLGVVIGGLVVAMYLPVFRMGALV 417 K AE E EVD+AV L+++MEP+I+ +LG+VIG L+VAMYLP+F +G +V Sbjct: 359 KAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIGTLLVAMYLPLFNLGNVV 409