BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0324.p         (137 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2831 [LR] COG0494 NTP pyrophosphohydrolases including oxidati...   148   3e-36
NMA2032 [LR] COG0494 NTP pyrophosphohydrolases including oxidati...   127   5e-30
NMB0453 [LR] COG0494 NTP pyrophosphohydrolases including oxidati...   125   4e-29
sll1045 [LR] COG0494 NTP pyrophosphohydrolases including oxidati...    94   8e-20
CC0833 [LR] COG0494 NTP pyrophosphohydrolases including oxidativ...    91   7e-19

>RSc2831 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes Rso Ralstonia solanacearum
          Length = 153

 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/124 (58%), Positives = 90/124 (72%), Gaps = 1/124 (0%)

Query: 6   KPIDVAVGILMQPNGDVLLGQRPAGKPYEGYWEFPGGKVEPGESIFAALQREFKEELGIE 65
           K  +VAVG+L+QP+G  LL QRP GKPY GYWEFPGGK+E GES+ AAL RE KEEL I 
Sbjct: 23  KITEVAVGVLVQPDGRFLLAQRPEGKPYAGYWEFPGGKLESGESVEAALTRELKEELDIT 82

Query: 66  VIDGEPWCGVEHVYPHAHVRLHFYISRQWRGQPQSLEGQAFAWQG-SVGVEPLLPATIPL 124
           +   E W  +EH YPHA+VRLHF     W G  ++LEGQ FAWQ   + V+P+LPAT+P+
Sbjct: 83  LRACERWHTIEHDYPHAYVRLHFCKVTAWDGALRALEGQDFAWQTLPISVDPVLPATLPV 142

Query: 125 IQWL 128
            +W+
Sbjct: 143 FEWM 146


>NMA2032 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes NmA Neisseria meningitidis Z2491
          Length = 269

 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 84/134 (62%), Gaps = 5/134 (3%)

Query: 1   MSSPSKP-IDVAVGILMQPNGDVLLGQRPAGKPYEGYWEFPGGKVEPGESIFAALQREFK 59
           M+  ++P I V  GIL+  +GD LL  RP GKPY GYWEF GGKVE GE+ F ALQREF+
Sbjct: 1   MTQDTRPLIRVVAGILLNRDGDYLLSSRPEGKPYAGYWEFAGGKVEAGETDFQALQREFE 60

Query: 60  EELGIEVIDGEPWCGVEHVYPHAHVRLHFYISR--QWRGQPQSLEGQAFAWQ--GSVGVE 115
           EELGI ++   PW    H Y HA V L F      QW G+PQS EGQ ++WQ  G   V 
Sbjct: 61  EELGIRILAATPWLTKIHSYEHARVCLKFLWVNPDQWMGEPQSREGQEWSWQKAGDFTVA 120

Query: 116 PLLPATIPLIQWLD 129
           P+LPA   L++ L 
Sbjct: 121 PMLPANGALLRSLS 134


>NMB0453 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes Nme Neisseria meningitidis MC58
          Length = 269

 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 83/134 (61%), Gaps = 5/134 (3%)

Query: 1   MSSPSKP-IDVAVGILMQPNGDVLLGQRPAGKPYEGYWEFPGGKVEPGESIFAALQREFK 59
           M   ++P I V  GIL+  +G+ LL  RP GKPY GYWEF GGKVE GE+ F ALQREF+
Sbjct: 1   MIQDTRPLIRVVAGILLDSDGNYLLSSRPEGKPYAGYWEFAGGKVEAGETDFQALQREFE 60

Query: 60  EELGIEVIDGEPWCGVEHVYPHAHVRLHFYISR--QWRGQPQSLEGQAFAWQ--GSVGVE 115
           EELGI ++   PW    H Y HA V L F      QW G+PQS EGQ ++WQ  G   V 
Sbjct: 61  EELGIRILAATPWLTKIHSYEHARVCLKFLWVNPDQWTGKPQSREGQEWSWQKAGDFTVA 120

Query: 116 PLLPATIPLIQWLD 129
           P+LPA   L++ L 
Sbjct: 121 PMLPANGALLRSLS 134


>sll1045 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes Syn Synechocystis
          Length = 136

 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 65/108 (60%)

Query: 1   MSSPSKPIDVAVGILMQPNGDVLLGQRPAGKPYEGYWEFPGGKVEPGESIFAALQREFKE 60
           M+ PSK   + V +++   G+VL+ +RP G  + G WEFPGGK+EPGE+    + RE +E
Sbjct: 1   MTFPSKHKQIGVAVIINDQGEVLIDRRPVGGSFGGLWEFPGGKLEPGETAAECIVREVRE 60

Query: 61  ELGIEVIDGEPWCGVEHVYPHAHVRLHFYISRQWRGQPQSLEGQAFAW 108
           E+ IEV  GE    ++H YP   + L+ ++ +   GQPQ++  +   W
Sbjct: 61  EIAIEVAVGESLITIDHSYPQVRLTLYVHLCQYLSGQPQTIACEEIRW 108


>CC0833 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes Ccr Caulobacter vibrioides
          Length = 134

 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 71/129 (55%), Gaps = 5/129 (3%)

Query: 5   SKPID-VAVGILMQPNGDVLLGQRPAGKPYEGYWEFPGGKVEPGESIFAALQREFKEELG 63
           +KPI  VA   L+  +G VL+ QRP GK   G WEFPGGKVE GE+    L RE +EELG
Sbjct: 2   TKPIVLVAAAALIDVDGRVLICQRPQGKQLAGLWEFPGGKVEAGETPEQCLIRELQEELG 61

Query: 64  IEVIDG--EPWCGVEHVYPHAHVRLHFYISRQWRGQPQSLEGQAFAWQ--GSVGVEPLLP 119
           I+V      P+    H Y   H+ +  Y+ R+W GQ    E +A AW     +   P+ P
Sbjct: 62  IKVAQACLAPFVFASHSYESFHLLMPLYLLRRWEGQVTRKEHEALAWVKPDKLSDYPMPP 121

Query: 120 ATIPLIQWL 128
           A  PL+ WL
Sbjct: 122 ADEPLVAWL 130