BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0295.p         (89 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb20121 [K] COG3609 Predicted transcriptional regulators contai...   115   2e-26
SMc00693 [K] COG3609 Predicted transcriptional regulators contai...    52   3e-07
msl3422 [K] COG3609 Predicted transcriptional regulators contain...    47   1e-05
AGc2786 [K] COG3609 Predicted transcriptional regulators contain...    39   0.002
AGc1484 [K] COG3609 Predicted transcriptional regulators contain...    38   0.005

>SMb20121 [K] COG3609 Predicted transcriptional regulators containing the
          CopG/Arc/MetJ DNA-binding domain Sme Sinorhizobium
          meliloti
          Length = 91

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 72/88 (81%)

Query: 1  MRTTQQMSITLPNDMADVVRSKVRSGEYASESEVIRDGLRTLLARDRAVENWLNNQVGPA 60
          MR+TQQ S+TLPN+MA +V++KV SGEYASESEVIRDGLR L ARD+A+E+WL  +   A
Sbjct: 1  MRSTQQFSVTLPNEMAQMVKTKVSSGEYASESEVIRDGLRALQARDKALESWLRTEGVSA 60

Query: 61 YDALKADPSRAVTAEQVRARLAAEHAKT 88
          YD LKA+PSRA++ +QVR  LA++  ++
Sbjct: 61 YDKLKANPSRALSVDQVRQHLASKRKRS 88


>SMc00693 [K] COG3609 Predicted transcriptional regulators containing the
          CopG/Arc/MetJ DNA-binding domain Sme Sinorhizobium
          meliloti
          Length = 91

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 4  TQQMSITLPNDMADVVRSKVRSGEYASESEVIRDGLRTLLARDRAVENWLNNQVGPAYDA 63
          T+++SI+LP DMA +VR +V  G YAS SEVIR+ LR    R++   + L + +  + DA
Sbjct: 3  TEKLSISLPVDMARMVRRRVEDGAYASNSEVIREALRLWQQREQERGHRL-DAIRASLDA 61

Query: 64 LKADPSRAVTAE 75
             DP+R  +AE
Sbjct: 62 AANDPARHGSAE 73


>msl3422 [K] COG3609 Predicted transcriptional regulators containing the
          CopG/Arc/MetJ DNA-binding domain Mlo Mesorhizobium loti
          Length = 88

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 38/68 (55%)

Query: 18 VVRSKVRSGEYASESEVIRDGLRTLLARDRAVENWLNNQVGPAYDALKADPSRAVTAEQV 77
           +R ++ SG Y + SEV+R GLR L   +   E WL  ++      L+ DP++ + A+ +
Sbjct: 13 FIRKQLESGRYNNASEVVRAGLRMLEDFEAERERWLREEIPGRLTELQQDPAKGIPADTM 72

Query: 78 RARLAAEH 85
           +RL A H
Sbjct: 73 FSRLEARH 80


>AGc2786 [K] COG3609 Predicted transcriptional regulators containing the
          CopG/Arc/MetJ DNA-binding domain Atu Agrobacterium
          tumefaciens strain C58 (Cereon)
          Length = 88

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 7  MSITLPNDMADVVRSKVRSGEYASESEVIRDGLRTLLAR 45
          M+ +LP+ M D + S+++ GEYAS S+ +RD +R   AR
Sbjct: 4  MTFSLPDPMKDWIESRIQKGEYASASDYVRDLVRRDWAR 42


>AGc1484 [K] COG3609 Predicted transcriptional regulators containing the
          CopG/Arc/MetJ DNA-binding domain Atu Agrobacterium
          tumefaciens strain C58 (Cereon)
          Length = 93

 Score = 38.1 bits (87), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 1  MRTTQQMSITLPNDMADVVRSKVRSGEYASESEVIRDGLRTLLAR 45
          M   +++S+++    A+++R  V SG YAS SEVIR+ +R   A+
Sbjct: 1  MANVEKISVSMTPQHAEILRDAVESGAYASSSEVIREAMRDWSAK 45