BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0274.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1605 Non COG                                                         33   0.16 
MA2116 [V] COG0286 Type I restriction-modification system methyl...    33   0.30 
PAE2679 [K] COG1846 Transcriptional regulators Pya Pyrobaculum a...    31   1.1  
XF1589 [R] COG1487 Predicted nucleic acid-binding protein, conta...    30   1.6  
slr2098_6 [T] COG2198 FOG Syn Synechocystis                            30   2.0  

>PA1605 Non COG
          Length = 344

 Score = 33.5 bits (75), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 92  SEFGSPAMLHARIKSMREKGWIVLADTEDPRRKQVELSQAAWLH 135
           +EF  P +LHA + S RE+  + LA+ E+P R    + +  W H
Sbjct: 182 AEFDLPVLLHANVTSKRERNPLYLAEIEEPLRNHPHV-RFIWAH 224


>MA2116 [V] COG0286 Type I restriction-modification system
           methyltransferase subunit Mac Methanosarcina acetivorans
           str.C2A
          Length = 498

 Score = 32.7 bits (73), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 16/90 (17%)

Query: 43  YLRFLQLAEALR--------GLPALPTLD--------PLEDRILAFIARAGQEQQRLSVR 86
           YL FL++AE  R        G+P   T D         L+ R    +   GQ+   L   
Sbjct: 35  YLIFLKMAEEYRKPPYNRDIGIPEKYTWDNLKQQRGAELDTRYKELLEELGQKPGMLGQI 94

Query: 87  DLMAQSEFGSPAMLHARIKSMREKGWIVLA 116
            L AQ++   PAML+  I  + ++ W+++ 
Sbjct: 95  FLKAQNKVSDPAMLYKIIDMIDKESWVMMG 124


>PAE2679 [K] COG1846 Transcriptional regulators Pya Pyrobaculum aerophilum
          Length = 174

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 37  KRPADIYLRFLQ-----LAEALRGLPALPTLDPLEDRILAFIARAGQEQQRLSVRDLMAQ 91
           +R  DI L F       LAEA +       L PL+ +I  ++A+ G+       R+L   
Sbjct: 2   ERTVDIILAFSNALWRLLAEASKK----HGLSPLQGQIALYLAKRGEASVTQIARELAVS 57

Query: 92  SEFGSPAMLHARIKSMREKGWIVLADTEDPRRKQVELSQA 131
               S ++     KSM + G++ +A   D R K V L++A
Sbjct: 58  ISTASESL-----KSMIKLGYVEVARGRDKRVKVVRLTEA 92


>XF1589 [R] COG1487 Predicted nucleic acid-binding protein, contains PIN
           domain Xfa Xylella fastidiosa 9a5c
          Length = 142

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 16/87 (18%)

Query: 42  IYLRFLQLAEALRGLPALPT--------------LDPLEDRILAFIARAGQEQQRLSVRD 87
           +YL  + L+E L G+  LPT              LD   +R+L F   A +    L+V+ 
Sbjct: 33  LYLSSVTLSELLFGIAVLPTSKRKDMLARTLDGLLDLFNERVLPFNTDAARHYAELAVKA 92

Query: 88  LMAQSEFGSPAMLHARIKSMREKGWIV 114
             +   F +P    A I + R  G+IV
Sbjct: 93  RNSGRGFPTPDGYIAAIAASR--GYIV 117


>slr2098_6 [T] COG2198 FOG Syn Synechocystis
          Length = 218

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 9  NTGTKKVRCNQYPGLNNDNQLQRHMGKNKRPADIYLRFLQ 48
          NT   ++     PGLN+D+ L+R +GK      +YL+ L 
Sbjct: 16 NTSDPEISIPHIPGLNSDDGLRRVLGKKS----LYLKMLH 51